SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23177

Length: 448 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene23177
CGTCGTGACCTTGGCTGTCACTCAGCCGGTTTATCACTTCCACGGTTTCGCATTTCATGGTCTCCATCCTATCCTCCCGCTAAACAAATTGTTAACACCACCTTCTTGATAAGCCAGAAGGACAAGGGAGACAAAGGGAAGATTAGGTGTTTTGCTCAGCTGTTTCTCAGCGTTTTGTTGGCGTGGCTATCTGCTGATTTAGAGCGCTTTCGTTTTGCCGCGCACTTGCCCCTACTTGGCTAATAATTTCTTCAGAACTTCGACAATGTCGGGTCCTCTCGACAGATTTGCTAGGCCGTGTTTTGAGGGATCTTCTGCTCAAGATGAAAGGAGAGAGAGGAAATCTGATGTGGAGAATTCTGAGGACGAGCGAAGAAAAACTAAAATTGGAGCTCTTAAAAAGAAAGCAATCAATGCCTCAACGAAGTTTCGGCACTCCTTAAAAAAA

Ace file of the UniGene sp_v1.1_unigene23177

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	like phosphatidylinositol transfer protein	-	-	1.36449e-26	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.36449e-26	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Immunoglobulin-like	IPR007110	-	1.36449e-26	88%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQR7

Fln msg: Distance to subject end: 560 aas, your sequence is shorter than subject: 61 - 621

Fln protein: MSGPLDRFARPCFEGSSAQDERRERKSDVENSEDERRKTKIGALKKKAINASTKFRHSLKK

Protein Length: 62

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCCGGTTTATCACTTCCACGGTTTCGCATTTCATGGTCTCCATCCTATCCTCCCGCTAAACAAATTGTTAACACCACCTTCTTGATAAGCCAGAAGGACAAGGGAGACAAAGGGAAGATTAGGTGTTTTGCTCAGCTGTTTCTCAGCGTTTTGTTGGCGTGGCTATCTGCTGATTTAGAGCGCTTTCGTTTTGCCGCGCACTTGCCCCTACTTGGCTAATAATTTCTTCAGAACTTCGACA_-_ATGTCGGGTCCTCTCGACAGATTTGCTAGGCCGTGTTTTGAGGGATCTTCTGCTCAAGATGAAAGGAGAGAGAGGAAATCTGATGTGGAGAATTCTGAGGACGAGCGAAGAAAAACTAAAATTGGAGCTCTTAAAAAGAAAGCAATCAATGCCTCAACGAAGTTTCGGCACTCCTTAAAAAAA

Fln Alignment:

sp_v1.1_unigene23177___MSGPLDRFARPCFEGSSAQDERRERKSDVENSEDERRKTKIGALKKKAINASTKFRHSLKK
B8LQR7_______________MSGPLDRFARPCFEGSSAQDERRERKSDVENSEDERRRTKIGALKKKAINASTKFRHSLKK

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
37		66	33		1.0
38	66		33		1.0
41			33	66	1.0
42		72		27	1.0
46	7	14	78		0.999974
47	14	7	78		0.999974
101		87	12		0.999964
127	82	13		4	1.0
129		8	86		0.999539
131	86			13	1.0
135	86	8		4	0.999539
136	86	4		8	0.999539
137	91			8	0.999807
153		17		82	1.0
154			17	82	1.0
156		14	85		1.0
157		85	14		1.0
159		82	17		1.0
161		14	82		1.0
165			17	82	1.0
166		17		82	1.0
168		82	17		1.0
172			82	2	1.0
174	2		82	11	1.0
175		11		85	1.0
176	11			88	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain