SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23168

Length: 2327 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene23168
CACGTCGTGACCTTGGCTGTCACTCAGTCCTTTTTGAAGAAATTGCAACCGGGGAAACTTCCGGTAATTTCAGAGGATCCATCGATTGCCCTACATCAGCACCCGATATATATATATGCAAGTGTGTTGAAGCGATTTCAATACAACTCCTTCCATTTGCTGTTCAGCCCCATTAATCCCACTGGATTTCTGTAATTTTTCTGAAGGGGATCGTTCTCTGCAGGCGTAAGGATCCTTTGCTCAGCTGCTATAAGATCAAGGAACGGCCAGCTGTTATTATCATATCAATTAGTCTTGATACAACACAGTCTGCAACATTAGCAGAGAAGGTGCTAGTTATGGGCTTAATTCAAATGATTTCATGGGAGCTATTGCTCTCCATTTTAGCACTAGCATTGTTTAGTTCTTCTGTTACTGCAGAAGATCCTTACAAGTTCTTTACATGGAACATTACCTATGGCACTATTTACCCCCTTGGCGTTCCTCAACAGGGGATTCTCATCAATGGTCAGTTTCCAGGGCCTCCAATTGACAGCGTAACCAATGATAACATTATTGTCAATGTTTTCAACAACTTGCCCGAACCTTTCCTTCTCTCCTGGAATGGAGTTCAGCAAAGAAGAAATTCATGGCAAGATGGTATGCCGGGCACCAACTGTCCAATCCCGCCTGGAAGAAATTACACATATAAGTTTCAGATGAAGGATCAGATTGGCAGTTATTACTACTTTCCTTCCATGTACTTCCATAAAGCAGCTGGAGGGTTTGGCGGTATAAAGATCGTAAGCCGGCCCTTGATTCCAGTTCCATTCCCACCTCCTGCAGGCGACTATACAGTTCTTATAGGGGACTGGTACAAGACCAATCATTCGATCCTACGACAAACACTTGACAGTGGCTCAACTCTTGGCATGCCTGATGGAGTTCTCATAAATGGTCAAGCTCCAAATGCCACATCATTTACTGTAGATCAAGGAAAAACTTATCGTTTCCGCATATCCAATGTGGGTTTGGCAAGTTCTCTGAACTTCAGGATTCAGGGGCATAAAATGAAGCTGGTGGAAGTAGAAGGCTCTCACACTGTTCAAAACATATATGATTCTCTAGACATTCATTTGGGTCAATCCTACTCTGTACTGGTCACTGCGGATCAGCCTCCTCAGGCCTATTACATGGTTGCATCTACACGGTTCACTACTCCTATGCTAACAGGCATTGCTTTTCTCCGCTATAGCAATTCACAGACGTCTGCTTCTGGTCCGCTTCCTCCTGCTCCAACTGGAATCGATTGGTCGTTGAACCAAGCTCGATCCATCAGATGGAATCTGACCGCGAGTGGCCCTCGTCCGAATCCTCAAGGATCTTACCATTATGGAATGATAAATACCTCACGAACTATTATACTAGCCAATTCAGCCCCAGTTATCAATGGGAAGCAGAGATATGCTGTAAACAGTATTTCTTTTATCCAACCAGACACTCCCTTGAAGTTGGCGGATTACTTGAAAATCAGTGGGGTATTTAATGTGGGTTCTATGCCTGATAGGCCCACCAATGGAGGAGGTTACTTGCAGACAGCTGTTATGGGCTCTGATTTCAGAGCTTTCATTGAAATTGTTTTCCAGAACAGCGAGGACACTATCCAGTCATGGCATCTGGATGGCTATTCATTCTTTGTCCTAGGAATGGATGGTGGCCAATGGACACAGGCAAGCATGAAAGAATACAACTTGTTTGACACTGTTTCCCGCTGCACTACGCAGGTTTATCCCAACTCATGGACAGCTATTCGCGTGCCTCTGGATAATGTTGGGATGTGGAATTTGCGGTCAGAGAATTGGGCACGTCAATACCTTGGACAACAGTTCTACCTTCGGGTTTATTCTCCTGCGGGCTCATTCAGAGATGAATATTCAATCCCTAATAATGCTCTGAAATGTGGACGGGCTGGCTGAAGAGTTACAGGGGGCCTGTAGATCAATGGTTTAGATATCTGTGTCACAATTGGGTGACTATTGAATTGAATTGAATGCGGCCGATTCTTATAAATAACCTGTGATTTTCTTGGCAGACGAGCAATCAATGGGATCATAATGAGGCAGATTAACGGCTCATTGTTTTATCCACACTTTAGTGATATGTAACAGCTCAGCTCAAGCTGTGAGATATGACAATTCTTAATTTATTAATTCAAAGGGGAATCATCATTTTTCATTCGCTTGCATTGGAATGATTTTATTGTGTTTTATAGATAGAGCACATGAGATTAGTCTCGCCACTTTAAGAATGAAGATCAAATAAAAACACTTGGTTTTTATATTTATGGG

Ace file of the UniGene sp_v1.1_unigene23168

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	multicopper oxidase, putative (EC:1.10.3.3)	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	multicopper oxidase	-	-	84%

Source	InterPros	Term	Type	Identity
Blast2go	Multicopper oxidase, type 1	IPR001117	-	84%
Blast2go	Cupredoxin	IPR008972	-	84%
Blast2go	Multicopper oxidase, type 2	IPR011706	-	84%
Blast2go	Multicopper oxidase, type 3	IPR011707	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXG3

Fln msg:

Fln protein: MGLIQMISWELLLSILALALFSSSVTAEDPYKFFTWNITYGTIYPLGVPQQGILINGQFPGPPIDSVTNDNIIVNVFNNLPEPFLLSWNGVQQRRNSWQDGMPGTNCPIPPGRNYTYKFQMKDQIGSYYYFPSMYFHKAAGGFGGIKIVSRPLIPVPFPPPAGDYTVLIGDWYKTNHSILRQTLDSGSTLGMPDGVLINGQAPNATSFTVDQGKTYRFRISNVGLASSLNFRIQGHKMKLVEVEGSHTVQNIYDSLDIHLGQSYSVLVTADQPPQAYYMVASTRFTTPMLTGIAFLRYSNSQTSASGPLPPAPTGIDWSLNQARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVNSISFIQPDTPLKLADYLKISGVFNVGSMPDRPTNGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTQASMKEYNLFDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKCGRAG*

Protein Length: 540

Fln nts: CACGTCGTGACCTTGGCTGTCACTCAGTCCTTTTTGAAGAAATTGCAACCGGGGAAACTTCCGGTAATTTCAGAGGATCCATCGATTGCCCTACATCAGCACCCGATATATATATATGCAAGTGTGTTGAAGCGATTTCAATACAACTCCTTCCATTTGCTGTTCAGCCCCATTAATCCCACTGGATTTCTGTAATTTTTCTGAAGGGGATCGTTCTCTGCAGGCGTAAGGATCCTTTGCTCAGCTGCTATAAGATCAAGGAACGGCCAGCTGTTATTATCATATCAATTAGTCTTGATACAACACAGTCTGCAACATTAGCAGAGAAGGTGCTAGTT_-_ATGGGCTTAATTCAAATGATTTCATGGGAGCTATTGCTCTCCATTTTAGCACTAGCATTGTTTAGTTCTTCTGTTACTGCAGAAGATCCTTACAAGTTCTTTACATGGAACATTACCTATGGCACTATTTACCCCCTTGGCGTTCCTCAACAGGGGATTCTCATCAATGGTCAGTTTCCAGGGCCTCCAATTGACAGCGTAACCAATGATAACATTATTGTCAATGTTTTCAACAACTTGCCCGAACCTTTCCTTCTCTCCTGGAATGGAGTTCAGCAAAGAAGAAATTCATGGCAAGATGGTATGCCGGGCACCAACTGTCCAATCCCGCCTGGAAGAAATTACACATATAAGTTTCAGATGAAGGATCAGATTGGCAGTTATTACTACTTTCCTTCCATGTACTTCCATAAAGCAGCTGGAGGGTTTGGCGGTATAAAGATCGTAAGCCGGCCCTTGATTCCAGTTCCATTCCCACCTCCTGCAGGCGACTATACAGTTCTTATAGGGGACTGGTACAAGACCAATCATTCGATCCTACGACAAACACTTGACAGTGGCTCAACTCTTGGCATGCCTGATGGAGTTCTCATAAATGGTCAAGCTCCAAATGCCACATCATTTACTGTAGATCAAGGAAAAACTTATCGTTTCCGCATATCCAATGTGGGTTTGGCAAGTTCTCTGAACTTCAGGATTCAGGGGCATAAAATGAAGCTGGTGGAAGTAGAAGGCTCTCACACTGTTCAAAACATATATGATTCTCTAGACATTCATTTGGGTCAATCCTACTCTGTACTGGTCACTGCGGATCAGCCTCCTCAGGCCTATTACATGGTTGCATCTACACGGTTCACTACTCCTATGCTAACAGGCATTGCTTTTCTCCGCTATAGCAATTCACAGACGTCTGCTTCTGGTCCGCTTCCTCCTGCTCCAACTGGAATCGATTGGTCGTTGAACCAAGCTCGATCCATCAGATGGAATCTGACCGCGAGTGGCCCTCGTCCGAATCCTCAAGGATCTTACCATTATGGAATGATAAATACCTCACGAACTATTATACTAGCCAATTCAGCCCCAGTTATCAATGGGAAGCAGAGATATGCTGTAAACAGTATTTCTTTTATCCAACCAGACACTCCCTTGAAGTTGGCGGATTACTTGAAAATCAGTGGGGTATTTAATGTGGGTTCTATGCCTGATAGGCCCACCAATGGAGGAGGTTACTTGCAGACAGCTGTTATGGGCTCTGATTTCAGAGCTTTCATTGAAATTGTTTTCCAGAACAGCGAGGACACTATCCAGTCATGGCATCTGGATGGCTATTCATTCTTTGTCCTAGGAATGGATGGTGGCCAATGGACACAGGCAAGCATGAAAGAATACAACTTGTTTGACACTGTTTCCCGCTGCACTACGCAGGTTTATCCCAACTCATGGACAGCTATTCGCGTGCCTCTGGATAATGTTGGGATGTGGAATTTGCGGTCAGAGAATTGGGCACGTCAATACCTTGGACAACAGTTCTACCTTCGGGTTTATTCTCCTGCGGGCTCATTCAGAGATGAATATTCAATCCCTAATAATGCTCTGAAATGTGGACGGGCTGGCTGA___AGAGTTACAGGGGGCCTGTAGATCAATGGTTTAGATATCTGTGTCACAATTGGGTGACTATTGAATTGAATTGAATGCGGCCGATTCTTATAAATAACCTGTGATTTTCTTGGCAGACGAGCAATCAATGGGATCATAATGAGGCAGATTAACGGCTCATTGTTTTATCCACACTTTAGTGATATGTAACAGCTCAGCTCAAGCTGTGAGATATGACAATTCTTAATTTATTAATTCAAAGGGGAATCATCATTTTTCATTCGCTTGCATTGGAATGATTTTATTGTGTTTTATAGATAGAGCACATGAGATTAGTCTCGCCACTTTAAGAATGAAGATCAAATAAAAACACTTGGTTTTTATATTTATGGG

Fln Alignment:

sp_v1.1_unigene23168___MGLIQMISWEXXXXXXXXXXXXXXVTAEDPYKFFTWNITYGTIYPLGVPQQGILINGQFPGPPIDSVTNDNIIVNVFNNLPEPFLLSWNGVQQRRNSWQDGMPGTNCPIPPGRNYTYKFQMKDQIGSYYYFPSMYFHKAAGGFGGIKIVSRPLIPVPFPPPAGDYTVLIGDWYKTNHSILRQTLDSGSTLGMPDGVLINGQAPNATSFTVDQGKTYRFRISNVGLASSLNFRIQGHKMKLVEVEGSHTVQNIYDSLDIHLGQSYSVLVTADQPPQAYYMVASTRFTTPMLTGIAFLRYSNSQTSASGPLPPAPTGIDWSLNQARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVNSISFIQPDTPLKLADYLKISGVFNVGSMPDRPTNGGGYLQTAVMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTQASMKEYNLFDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKCGRAG
A9NXG3_______________MGLIQRKSWELLLSIFALVLFGSSVNGEDPYKFFTWNITYGIIYPLGVPQQGILINGQFPGPPIDSVTNDNIIINVYNNLPEPFLLSWNGIQQRRNSWQDGMPETNCPIPPGRNYTYKFQMKDQIGSYYYFPSMYLHKAAGGFGGIKIVSRPLIPVPFPPPAGDYTVLIGDWYKTNHSILRQTLDSGSILGVPDGVLINGRAPNATSFTVDQGKTYRFRISNVGLASSLNFRIQGHKMKLVEVEGSHTVQNTYDSLDIHLGQSYSVLVTADQPPQDYYMVASTRFSTPILTGISFLRYSNSQKSASGPLPPAPTGIDWSLNQARSIRWNLTASGPRPNPQGSYHYGMINTSRTIILANSAPVINGKQRYAVNSVSYIPSDTPLKLADNLKITGVFVVGSMPDKPTNGGGYLQTAVMGADFRAFVEIVFQNNEDTVQSWHLDGYSFFVLGMDGGQWTQASIKEYNLFDTVSRCTTQVYPQSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPVGSFRDEYSIPNNALKCGRVG

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
41	80	20			0.999996
42	80		20		0.999996
44		20		80	0.999996
46		80		20	0.999996
47	80		20		0.999996
51			80	20	0.999996
52			80	20	0.999996
56	80	20			0.999996
57	80			20	0.999996
58		80	20		0.999996
60		20		80	0.999996
61	20	80			0.999996
63			80	20	0.999996
64		20	80		0.999996
65	20			80	0.999996
121	58	41			1.0
128	41			58	1.0
129		41		58	1.0
130		41	58		1.0
131	58			41	1.0
132	58			41	1.0
136	55	38			1.0
138			44	55	1.0
144	72	22	5		1.0
145	22	77			1.0
175			7	92	0.999532
177	89	7	3		0.998606
179		89	7	3	0.998606
180	3	89		7	0.998606
319			72	27	1.0
359	69			30	1.0
360			69	30	1.0
382	38		61		1.0
407		61		38	1.0
1304		75	25		0.996473
1435	90		10		0.90298
2086		90		10	0.999898
2137	88		11		0.999937
2203	25		75		1.0
2215		16		83	0.994512

SSRs (tot: 2)

Start position	End position	Sequence	Length
106	117	AT AT AT AT AT AT	12
2015	2031	ATTGA ATTGA ATTGA AT	17

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain