SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23141

Length: 1508 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23141

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alcohol dehydrogenase (Fragment) n=1 Tax=Pinus banksiana RepID=Q43025_PINBN	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	alcohol dehydrogenase	-	-	93%

Source	InterPros	Term	Type	Identity
Blast2go	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	93%
Blast2go	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	93%
Blast2go	GroES-like	IPR011032	-	93%
Blast2go	Alcohol dehydrogenase, C-terminal	IPR013149	-	93%
Blast2go	Alcohol dehydrogenase GroES-like	IPR013154	-	93%
Blast2go	NAD(P)-binding domain	IPR016040	-	93%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWR7

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 448 and 207, STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 331 - 464

Fln protein: MEVRIKVCYTALCRTDLVFWEAKGQTPLFPRIFGHEAAGIVESVGEGVTDLKPGDSVLPVFTGECKECRHCKSEESNMCDLLRINTERGVMISDGKSRFSINGKPIYHFLGTSTFSEYTVVHVGCVAKINPKAPLSKVCILSCGVSTGMGATLNVGKPKKGSTVAIFGLGSVGLGAAEGARIAGASRIIGIDLNSDRYEQAKLFGVTEFINPQDYEKPVQEVIAEKTNGGVDCSIECTGNVKAMIQAFESCHDGWGVSVLVGVPHSDAVFATHPMNFLNERTLKGTFFGNYKPRSDLPGLVEMYLDKKLGPSTVRDVSAMLVATIMRLQFG

Protein Length: 332

Fln nts: GGGGGCAGATGTTAAAGAGTGAGCTTTCTTTCCCCACACATGTGGGCATGCAGACACTGACACTGATGCAGCTACGCGTCGCTTACAGAAAGGGATGTTGTTAAGTATTGTGGAATATAAGGAAGCAGACAAAACTGTCTCAGTTACGAGACGAATTTTGAAGCCGATCCTTGAAGGAAAATGATAAGTAGCACTGCAGAGTAGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTGTTGCTTGGGGACCTGGGCAGCCTTTGAAGATTGAAGAAGTGGAAGTGGCACCTCCACAAGCAATGGAAGTCAGGATCAAAGTGTGTTACACTGCCTTGTGCCGCACAGACCTTGTTTTTTGGGAAGCAAAGGGTCAAACGCCTCTCTTTCCCCGCATCTTTGGACATGAAGCAGCTGGAATTGTTGAAAGTGTTGGAGAAGGGGTAACTGACCTCAAGCCGGGTGACAGTGTGCTTCCTGTATTTACTGGAGAGTGCAAGGAATGCAGACACTGCAAGTCAGAAGAGAGCAACATGTGTGATCTGCTAAGAATTAATACTGAGAGAGGGGTCATGATAAGTGATGGAAAGTCAAGGTTTTCCATCAATGGAAAGCCAATTTACCACTTCCTTGGTACATCGACTTTCAGCGAGTACACTGTTGTGCATGTGGGTTGTGTTGCCAAAATTAATCCGAAGGCTCCTCTTAGCAAAGTCTGTATTCTAAGCTGTGGTGTCTCCACAGGGATGGGTGCTACTTTGAATGTGGGCAAACCAAAGAAGGGTTCGACAGTAGCAATATTCGGCCTAGGCAGTGTTGGGCTTGGTGCGGCCGAAGGCGCAAGAATTGCAGGAGCTTCTCGAATAATTGGAATCGATTTAAACAGTGACAGATATGAACAAGCGAAACTATTTGGCGTAACGGAATTTATAAACCCTCAAGACTACGAAAAGCCTGTTCAAGAGGTAATCGCGGAAAAAACTAATGGAGGGGTGGACTGCAGCATCGAATGCACAGGAAATGTGAAGGCGATGATTCAAGCCTTCGAGTCCTGCCATGATGGTTGGGGTGTATCGGTTTTAGTGGGAGTCCCTCATTCGGATGCAGTTTTTGCAACCCATCCTATGAATTTCCTGAACGAAAGGACTTTGAAGGGAACTTTCTTTGGAAACTATAAGCCTCGTTCTGATTTGCCAGGCCTTGTAGAGATGTATCTGGATAAGAAACTTGGACCATCTACAGTAAGGGATGTTTCTGCAATGTTAGTTGCAACAATAATGCGTCTACAATTTGGA

Fln Alignment:

sp_v1.1_unigene23141___SSIAGQVSSYKDEFSRP**PIFSIQSILDHLGRSTLQGKHQALL*AKLSHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCKENTKLYCKRSCRMQSAQTHKKPFEDQIDPSRNMASSTAGQVITCKAAVAWGPGQPLKIEEVEVAPPQAMEVRIKVCYTALCRTDLVFWEAKGQTPLFPRIFGHEAAGIVESVGEGVTDLKPGDSVLPVFTGECKECRHCKSEESNMCDLLRINTERGVMISDGKSRFSINGKPIYHFLGTSTFSEYTVVHVGCVAKINPKAPLSKVCILSCGVSTGMGATLNVGKPKKGSTVAIFGLGSVXXXXXXXXXXXXXXXXXXXDLNSDRYEQAKLFGVTEFINPQDYEKPVQEVIAEKTNGGVDCSIECTGNVKAMIQAFESCHDGWGVSVLVGVPHSDAVFATHPMNFLNERTLKGTFFGNYKPRSDLPGLVEMYLDKKL
A9NWR7_______________STTAGEVISYK---------VFGTR---DHLGRSTVQGNSQALLQAKFSHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYKENAKLYCRRSCRMQSAQTHKKPFEDQIDPSSKMASSTAGQVITCKAAVAWGPGQPLKIEKVEVAPPQAMEVRIKVHYTALCRTDLVFWEAEGQTPLFPRIFGHEAAGIVESVGEGVTDLKVGDSVLPVFTGECKECRHCKSEESNMCDLLRINTERGVMISDGKSRFSIDGKPVYHFLGTSTFSEYTVVHVGCVAKINPEAPLNKVCILSCGVSTGMGATLNVGKPKKGSTVAIFGLGSVGLGAAEGARIAGASRIIGIDLNSDRYEQAKLFGVTEFINPKDHKKPVQEVIAERTNGGVDCSIECTGNVKAMVQAFESCHDGWGVSVLVGVPHADAVFSTNPVNFLNERTLRGTFFGNYKPRSDLPGLVEMYLNKEL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
920		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain