SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23118

Length: 1360 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23118

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	clathrin assembly protein, putative (EC:1.3.1.74)	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	69%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	69%

Source	InterPros	Term	Type	Identity
Blast2go	ENTH/VHS	IPR008942	-	69%
Blast2go	ANTH	IPR011417	-	69%
Blast2go	Epsin-like, N-terminal	IPR013809	-	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW76

Fln msg: Distance to subject end: 68 aas, your sequence is shorter than subject: 283 - 351

Fln protein: MAPSKLRKALGAVKDQTSISIAKVASNNAPDLDVAIVKATSHDEVPIDEKYVYEILHLTSYSRGYVSACVHSLSKRISKTHNWIVAMKALMLIHRLFQDGDPSFEREVLQGMRRGARLLNLSDFRDDSHSNAWDYSAFVRTYALYLDERLDCSILGKCQFGDKSNKGQKSRAHSDVESSYPGGYEYSDGRYGGSNGYRNNSNNYESSYGSSRGNGYRSASGDYDGQQKQDEEKVGNGKPVAVRDMKPGMILDMIPHWQRLLERFLASRPTGAAKNNRLVQIAL

Protein Length: 284

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCCCAAGCATTTTTCGTCGGTAAGATGGATGGATTTTGTGCTCTGTAGGTCGGCCGTCTCCGTCCATGGCTTTTAAAATGTTCAATCAAAGTTCTTCCTCTACGACAATATAATGTGGATTCATATTTGAAGAAGAGGATTTTCTCAATGGTTTATAGCTTTGCTGGAGATTGGTGAGAGGAGGATTCGAACCGGCGTCAAAGGATCCATTTATATCGGCCGCTGTCCAGGGTTTAATCCGTGTCTCTGAGGTCCCCGGCATCGCTTCTGGTGGAGAGATTTGGTTGGTGGTGTCCAGGGCGGTGAAATCGGCAAGTTTGCCGTTAGCCATACAATTTTGTCATTATTTGGGGAATTTAGACCGTGAAAAGTGCAGTAGGGAGATTAGGTCCCGTTGGTAGAAATTTGGTTTTTTCAGAGCTTGAATTGCCTTTTTTGAGATCAAACCTTTGTTAACGTTAATTGTGCTTTTTGAGATTTGCGA_-_ATGGCTCCAAGTAAGCTAAGGAAAGCTCTCGGGGCTGTGAAGGACCAGACGAGTATTAGTATAGCAAAGGTTGCAAGCAACAATGCGCCCGATCTGGATGTTGCCATTGTAAAGGCAACAAGTCATGATGAAGTACCTATAGATGAAAAATATGTGTATGAAATTTTGCACCTCACCTCTTATTCCAGGGGTTATGTTAGTGCTTGTGTCCACAGTCTGTCCAAGAGGATCAGCAAAACACACAATTGGATAGTGGCAATGAAGGCGCTGATGCTCATTCATAGGCTATTTCAGGATGGTGATCCAAGTTTTGAGCGGGAAGTTCTTCAGGGAATGAGGCGTGGTGCACGCCTGCTCAATCTGTCTGATTTTAGAGATGATTCACACTCAAATGCTTGGGACTATTCCGCATTTGTACGCACATATGCCCTGTATCTCGATGAGCGCCTTGATTGCTCTATTTTGGGGAAATGTCAGTTTGGTGACAAATCTAATAAGGGTCAGAAGTCCAGGGCACACAGTGACGTTGAATCTAGTTACCCCGGTGGCTATGAATACAGCGATGGCCGTTATGGTGGTAGCAACGGCTACAGAAATAACTCCAACAATTATGAATCTAGTTATGGGAGCTCACGGGGCAATGGTTACAGATCTGCTTCTGGTGATTATGATGGCCAACAGAAGCAGGATGAGGAAAAGGTGGGGAATGGTAAGCCTGTTGCAGTTCGAGATATGAAGCCTGGAATGATACTCGATATGATCCCACATTGGCAAAGGCTGCTGGAACGGTTTCTGGCCAGCCGTCCAACAGGTGCTGCAAAAAACAACAGGTTGGTTCAGATTGCCCTTT

Fln Alignment:

sp_v1.1_unigene23118___MAPSKLRKALGAVKDQTSISIAKVASNNAPDLDVAIVKATSHDEVPIDEKYVYEILHLTSYSRGYVSACVHSLSKRISKTHNWIVAMKALMLIHRLFQDGDPSFEREVLQGMRRGARLLNLSDFRDDSHSNAWDYSAFVRTYALYLDERLDCSILGKCQFGDKSNKGQKSRAHSDVESSYPGGYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYDGQQKQDEEKVGNGKPVAVRDMKPGMILDMIPHWQRLLERFLASRPTGAAKNNRLVQIAL
A9NW76_______________MAPSKLRKALGAVKDQTSISIAKVASNNAPDLDVAIVKATSHDEIPIDEKYVYEILHLTSYSRGYVSACVHSLSKRISKTHNWIVAMKALMLIHRLFQDGDPSFEREVLQGMRRGARLLNLSDFRDDSHSNAWDYSAFVRTYALYLDERLDCSILGKCQFGDRSNKGQRSRAHSDLESSSPSGYEYSDGRYGGSNGYRYSSNNYESSYGGSRSNGYRSSSGDYDGQQKQDEEKGGNSRPVAVRDMKPGMILDMIPHWQRLLERFLASRPTGAAKNNRLVQIAL

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
387	50	50			1.0
389	50			50	1.0
396	50	50			1.0
397	50	50			1.0
398	50			50	1.0
399			50	50	1.0
400			50	50	1.0
403	50			50	1.0
408		50	50		1.0
409			50	50	1.0
410		50	50		1.0
421		25		75	0.996473
547			85	14	0.993533
549	14		85		0.993533
551		14		85	0.993533
552			85	14	0.993533
555	85		14		0.993533
556	85	14			0.993533
806			16	83	0.999991
807	83			16	0.999991
808		16		83	0.999991
809			16	83	0.999991
811		83	16		0.999991
813		16	83		0.999991
814		16	83		0.999991
815	83			16	0.999991
825	81			18	0.999994
826	81	18			0.999994
827	18		81		0.999994
853	90			10	0.90298
855		10	90		0.90298
858		10	90		0.90298
859	10	90			0.90298
868		90	10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain