SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23107

Length: 454 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene23107
CGTCGTGACCTTGGCTGTCACTCAGCTTGTTCCTTACTGTGTCCTTCTATTCCTTGTCTCTGTAATTGAATTTTCAACTTGTTCTTTACTGTGTCTTTCTATTCCTTGTCTCTTGTAATTGAATTTTCAGCTTTCAGCTGAGGAAGATATTACTGTGTGTTTATTTATCGACATTGTCTCTGTAATTGAATTTTCAGCTGAGGAAGATATTACTGTGTGTTTATCTATCGACATGACATCGAGCGAGAGACCACCTTCTGGTTACATAGCTTCAACCCCGGAAGATGTACCAGGGAAACCACGCACTATGGGATCCCACCTGATAGATGCAGGTGCCCAGATGCTTCAGAGCTTCACCCCTGTGAATCAGTTTCAACAGCATGTGTGCACTTGGGCAATATATGGACACGATATGACCTGGCAGTTTGTGACAGGCCATTATGTGGCCGAGGGT

Ace file of the UniGene sp_v1.1_unigene23107

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1264 domain containing protein	-	-	8.0e-07	36%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	52%
Blast2go	hypothetical protein SELMODRAFT_163927 [Selaginella moellendorffii]	-	-	1.40303e-15	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D8R837

Fln msg: Distance to subject end: 175 aas, your sequence is shorter than subject: 74 - 249

Fln protein: MTSSERPPSGYIASTPEDVPGKPRTMGSHLIDAGAQMLQSFTPVNQFQQHVCTWAIYGHDMTWQFVTGHYVAEG

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTGTTCCTTACTGTGTCCTTCTATTCCTTGTCTCTGTAATTGAATTTTCAACTTGTTCTTTACTGTGTCTTTCTATTCCTTGTCTCTTGTAATTGAATTTTCAGCTTTCAGCTGAGGAAGATATTACTGTGTGTTTATTTATCGACATTGTCTCTGTAATTGAATTTTCAGCTGAGGAAGATATTACTGTGTGTTTATCTATCGAC_-_ATGACATCGAGCGAGAGACCACCTTCTGGTTACATAGCTTCAACCCCGGAAGATGTACCAGGGAAACCACGCACTATGGGATCCCACCTGATAGATGCAGGTGCCCAGATGCTTCAGAGCTTCACCCCTGTGAATCAGTTTCAACAGCATGTGTGCACTTGGGCAATATATGGACACGATATGACCTGGCAGTTTGTGACAGGCCATTATGTGGCCGAGGGT

Fln Alignment:

sp_v1.1_unigene23107___MTSSERPPSGYIASTPEDVPGKPRTMGSHLIDAGAQMLQSFTPVNQFQQHVCTWAIYGHDMTWQFVTGHYVA
D8R837_______________MASCDKVPAGQIPSSPDDVPGKPTTMMSKIMEKGADMLQSLEPVKQIQEHICTFAFYSHDMKRQIETHHYAS

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
53		90	10		0.90298
55		10		90	0.90298
58		90	10		0.90298
59	10			90	0.90298
61		10		90	0.90298
62			90	10	0.90298
64	90		10		0.90298
65	90		10		0.90298
66		10		90	0.90298
69	90			10	0.90298
70	90	10			0.90298
71	10			90	0.90298
72		10		90	0.90298
74		10		90	0.90298
75	10	90			0.90298
96		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain