SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23105

Length: 1569 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23105

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dev_Cell_Death domain containing protein	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	b2 protein	-	-	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Development/cell death domain	IPR013989	-	0.0	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP04

Fln msg:

Fln protein: MVDSFAFGQFGEELRGLSSEDQNWTLAASKLAIFEQMRGKNDRINSLEPKTFYSEVKQRGGN*MGSLRKLTTTNLT*FGNQPNLAPKLELCTAVIT*VMALIITTTAVATATTY*KNNSYSNSSFEKRFKTLPSSEMLPRNEILGGYIFVCNNDTMQEDLKRQLFGLPQRYRDSVRAITPGLPLFLYNYTTHQLHGIYQAISFGGSNIDPTAWEDKKCKGESRFPAQVRIRVKKVCKPLEEDAFRPILHHYDGPKFRLQLSVPETLALLDLFEENSI*

Protein Length: 279

Fln nts: ATGGGGGACTGACAAAGGAAAGGAGCTCAGAGCGCTTCAGGCTCTCAAATACTGAATCTCCATCAGTACCGGAAAGGTTTCTGCAGGAGGAAGTTGCAGATTTGGGTGAACCAGGTTGTTTTGTTGTTTATTTAAAGGATTCTGCAAGTGACATCCGAAGATTGAATTTTGGACTTTCTATATCGTAATTGCAGTGGCTGAAATCTGACTGTGGAGATTAAATCGGTTGAGTTAAGTTTTGGAAG_-_ATGGTGGACTCTTTCGCGTTCGGGCAGTTTGGGGAGGAGCTTCGGGGCCTGAGCTCAGAGGATCAGAATTGGACGCTGGCTGCCTCGAAGCTCGCTATTTTCGAACAAATGAGAGGAAAAAATGACAGGATTAACAGTCTGGAGCCCAAAACTTTCTATTCAGAAGTGAAACAGAGAGGGGGAAATTGAATGGGAAGCTTGAGGAAGTTAACGACAACCAATTTAACCTGATTTGGAAACCAGCCGAATCTGGCACCAAAGTTGGAGTTATGCACGGCGGTTATAACATAAGTCATGGCATTAATTATAACAACAACAGCAGTAGCAACGGCAACAACTTACTAAAAAAACAATAGCTACAGCAACAGTAGCTTCGAAAAGCGGTTCAAGACGTTGCCATCCTCGGAAATGCTTCCTAGAAATGAGATCCTCGGTGGCTACATCTTTGTATGCAATAACGACACTATGCAAGAAGATCTCAAACGGCAGCTGTTTGGTTTGCCTCAACGATATCGAGATTCTGTTCGTGCCATAACACCAGGTCTGCCACTCTTTTTGTATAATTATACAACCCATCAGTTGCATGGAATATATCAGGCCATCAGCTTTGGAGGATCCAATATTGATCCAACTGCTTGGGAAGACAAAAAATGCAAAGGTGAATCAAGGTTTCCAGCACAGGTGAGGATTCGTGTTAAAAAGGTGTGCAAACCACTTGAAGAGGATGCTTTTAGGCCTATCTTGCATCATTATGATGGTCCCAAGTTCCGGCTACAGCTCTCTGTCCCAGAGACTTTGGCTTTGCTGGACCTGTTTGAGGAGAACAGCATATGA___AGCATACATCCTAGGCTAATTTTAGGATAGTTTCTTCCCATGTAGAGGGATTGGCTTGGATTGGCTGGTATATCTCAATCTTTTCAAGCCTAATCTCGAATGTTCAAACTTTTGCAGATGCTTTATGTGCAGTGCTGTCTAATGTCCAGGTTTCATGCTATTCCTCCGCAGATCTATGGTTTTGGCCATTGTTGGTCAATATTGCACAGGAGGGAAGTTAAGCCAATCAAACTTCCTTGTGCCAAGGGCAGAAGTGAAAATGTTGCAAGCTGCAACAATAAGAAAGCTTGTTTTGTATAATTGACATCACTTGTTTTGAATTATTCAACAAGCAAGATTGGTGATGTATTTATCTGATTGTATCAGAAGGGGGATGCATGTGTTTGATATTTGTGGCATTTTAGTTTAATGTCAATTATGTTATAGAGTTCTTTTTGCATTCTTATTGTATTTTACTGGTTCAAATCTTTTATAATGAGATGACGCATAA

Fln Alignment:

sp_v1.1_unigene23105___MVDSFAFGQFGEELRGLSSEDQNWTLAASKLAIFEQMRGKNDRINSLEPKTFYSEVKQRGGN*MGSLRKLTTTNLT*FGNQPNLAPKLELCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEKRFKTLPSSEMLPRNEILGGYIFVCNNDTMQEDLKRQLFGLPQRYRDSVRAITPGLPLFLYNYTTHQLHGIYQAISFGGSNIDPTAWEDKKCKGESRFPAQVRIRVKKVCKPLEEDAFRPILHHYDGPKFRLQLSVPETLALLDLFEENSI
A9NP04_______________MVDSFAFWQLGESLRGLSSEDQNWTLAASKLATFEQTRGKSDRINSLEPKTSYAEVKHRGGKSNGKLEEVNDNQFNLIWKPAEAGTKVGIVHGGYNINHVINYNNNNTSSNGNNNYNNNS----FEKRFKTLPSSEMLPRNEILGGYIFVCNNDTMQEDLKRQLFGLPQRYRDSVRAITPGLPLFLYNYTTHQLHGTYQAISFGGSNIDPTAWEDKKCKGESRFPAQVRIRVKKVCKPLEEDAFRPILHHYDGPKFRLQLSVPETLALLDLFEENSI

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
558	75		25		0.996473
1092	16	83			1.0
1173		90		9	1.0
1385	30	69			1.0
1492		26		73	1.0
1514	16		66		0.988813
1516	83			16	0.994512
1517	16			83	0.994512
1518	16			83	0.994512
1519		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain