SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23092

Length: 1593 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23092

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoglycerate mutase n=1 Tax=Picea sitchensis RepID=A9P0J9_PICSI	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	phosphoglycerate mutase	-	-	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0J9

Fln msg:

Fln protein: MELLLSNFPKWPWHSSFNSKHRTSRSANLTMACTRVESVTSAGKIAVPSTKSHLVLMRHGESMWNDLKLFTGDVDIPLTENGVMEALASGRSVSEIDFDIIFTSRLVRAKQTALIAMTQSRFKRVPVIVRGGFHGRGKTGDANRLRLRDAAAKALKHASCHMVPVYADPALNERCYGDLQGLSKEAATKEFGEETVMKWRRSYDTRPPHGESLKDTAARSVRFFKSTIIPRLQEHRNVLIVAHGNVLRCIIAHLAGFSEMEMLKLQIVTALPYAYTYDGGTFAECCALPPLDPNRNNDDQQGVPLGISSVFKTGDINSLI*

Protein Length: 322

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCGCTGGATTCACTATTCTTAAAATACAATACCAAATTTCAATTTCGCTGTACCCAATAGCAAACCCCCAAAGCGTCGTGGCGTTGGGTTTCCGTCTCTTTTTTATCTTACTATCTTACTTCCTCTAAAATGTCTGACTCTTTCAGGTGTACAAATATTTCTGGTTGTCAATTCTTCCTTCTCATTGACTTTTGAGGAACAATAGCTTGTTTTTCTTCTTCTACAATGGAGTCCTCACGTTCCTCACACGGCTCGTCTGATCATCGATATCGCACACGAACTTGAACTTGATCTTCTTCT_-_ATGGAGTTATTATTATCGAATTTTCCGAAATGGCCCTGGCATTCTTCTTTCAATTCCAAGCACCGGACATCTCGGTCAGCAAATTTGACAATGGCATGCACCAGAGTCGAATCTGTGACATCTGCTGGCAAGATTGCGGTCCCGAGTACCAAAAGCCACCTGGTTCTCATGCGCCACGGTGAAAGTATGTGGAATGACTTGAAGCTTTTCACTGGGGATGTGGATATACCCCTTACAGAAAATGGAGTCATGGAAGCTTTAGCTAGTGGTCGTTCTGTTAGTGAAATTGATTTTGACATTATTTTCACCAGTAGATTGGTCCGAGCCAAACAGACAGCCCTTATTGCAATGACTCAGAGCAGATTCAAGAGGGTGCCAGTTATAGTAAGAGGGGGCTTTCATGGGAGAGGGAAGACTGGTGATGCAAATAGGTTACGGCTCCGAGATGCAGCTGCCAAGGCGTTAAAACATGCTTCCTGCCACATGGTTCCAGTTTATGCAGATCCTGCTCTTAATGAACGTTGCTATGGCGATCTCCAGGGATTGAGCAAGGAAGCAGCCACCAAAGAGTTCGGAGAGGAGACTGTTATGAAGTGGAGGAGGAGCTATGATACAAGGCCTCCTCATGGAGAAAGCTTGAAGGATACTGCAGCAAGATCTGTTAGATTTTTCAAGTCGACAATAATCCCAAGGTTACAAGAGCATCGGAATGTGCTAATTGTGGCTCACGGGAATGTTCTTCGTTGTATTATTGCCCACCTAGCTGGGTTTTCAGAGATGGAGATGTTGAAACTTCAGATTGTAACTGCCTTGCCTTATGCGTACACCTATGATGGTGGGACTTTTGCTGAGTGTTGTGCATTGCCTCCTTTGGACCCGAATAGAAATAATGATGATCAGCAAGGAGTCCCTTTGGGCATCTCGTCTGTGTTCAAGACTGGTGATATCAATTCACTTATTTGA___GAGCTGATCTAGTTGAAAGTCCACCCCAGCAATTCGTAAATTATAATCACCGAGGGACATTTTCCTTTCTTTCCTGTAAATTGTATGTTGTCTTAAATAACGTTTATATTATTTGGATCCTAACGTTTTCAATTTCTTTTCGGACCGTTCATAAATTGTATTCCCATGTTGGAGAAGTGGGACCGACCTTGTGGGAATTTGACTGTTCAAAATTTGTATCCCCATATTGGAGAAGTGGGGAGCAACCTTGTGGGAAATAATTTTCTAATGCAAAAATGTTTTACAAGGGATGGTCCTTTTGCTCG

Fln Alignment:

sp_v1.1_unigene23092___MELLLSNFPKWPWHSSFNSKHRTSRSANLTMACTRVESVTSAGKIAVPSTKSHLVLMRHGESMWNDLKLFTGDVDIPLTENGVMEALASGRSVSEIDFDIIFTSRLVRAKQTALIAMTQSRFKRVPVIVRGGFHGRGKTGXXXXXXXXXXXXXXXXXXSCHMVPVYADPALNERCYGDLQGLSKEAATKEFGEETVMKWRRSYDTRPPHGESLKDTAARSVRFFKSTIIPRLQEHRNVLIVAHGNVLRCIIAHLAGFSEMEMLKLQIVTALPYAYTYDGGTFAECCALPPLDPNRNNDDQQGVPLGISSVFKTGDINSLI
A9P0J9_______________MELLLQNFPKWPLYSSFNYKRRTSRPENLTMACTRIETATSAVNISVPSTKSHLVLMRHGESMWNDLKLFTGDVDIPLTENGVMEALASGRAVSEIDFDIIFTSRLVRAKQTALIAMTQSRFKRVPVIVRGGFHGRGKTGDANRLRLRDAAAKALKHASCHMVPVYADPALNERCYGDLQGLSKEAAIKEFGEETVMKWRRSYDTRPPHGESLKDTAARSVRFFKTTIIPRLEEHRNVLIVAHGNVLRCIIAHLAGFSDMEMLKLQIVTAMPYAYTYDGGTFAECCALPPLNPNRNDEDHQGVPLGISSVFKTGDVNSLI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
256	33		66		0.997452
1037		7		92	0.999664
1040		7	92		0.999664
1041		92	7		0.999664
1043	91		8		0.999766
1045		8		91	0.999766
1046		8		91	0.999766
1047			91	8	0.999766
1056			92	8	0.999718
1057		8	88	4	0.999262
1058		4	88		0.999262
1447	43		56		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain