SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23067

Length: 1164 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23067

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PAT1 multi-domain protein	-	-	4.0e-21	18%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	protein	-	-	1.18728e-29	73%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACM4

Fln msg: STOP codon was not found. Distance to subject end: 94 aas, your sequence is longer than subject: 315 - 226

Fln protein: METNNWRNEESRQKIVNKIMDTLQRHMPQTGADGMNELKKIALRFEEKIYTVAISQQDYLRRISLKMLSLESKANGPSNHFPGSSPGNNQRPLDPGGMMLRPQIRNQQQASANNLPLTGQPQPQQPMLQQNLQNSISAGGMPSSAGLAPSLSSIPNGLPPMQGMPHNSINSSTSQVLPPLLASNQRQLQSRQQQQQQHQIFQQQLHQQQQALLNKKLQQQSQLQPSLLQQQQSALPQSQLQPSQQAMLQPAQQPALQSTQQSILQQSQPSILQPAQQSVLQSTQQSALQQASQTPLQQHQQSMLRQQQSQQSVIQ

Protein Length: 316

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCGCGTTTTGTGATAGATTCAACCTCCCTCCCACGGCTGTCGGTCTTGGGGTCAACGGCAATTAACACCAAGGCGGACGGACCGCTTTTATCCGCTTTCTTTCTGTATAATATTGGTAAAAACCACACACCCTCGCCCCAAATCCTCTGCACAACACTCCTTTCTCTTCGTTTTCCATAGCTGGAGAGCGCC_-_ATGGAGACCAACAACTGGAGGAATGAGGAATCCAGGCAGAAGATCGTCAATAAGATAATGGACACTCTTCAGAGACACATGCCACAGACGGGTGCAGATGGAATGAATGAACTGAAAAAAATTGCTTTGCGGTTTGAGGAGAAGATTTATACAGTCGCTATAAGTCAGCAAGACTATCTACGGAGAATATCTCTCAAGATGCTATCATTAGAATCAAAAGCTAATGGACCTTCGAATCATTTTCCGGGTAGTTCTCCTGGTAACAACCAGCGGCCTCTGGATCCTGGAGGTATGATGTTACGACCACAGATTAGAAATCAACAGCAAGCATCTGCAAATAATCTCCCACTGACTGGGCAACCTCAACCACAACAACCAATGCTCCAACAAAATCTGCAAAATAGCATATCTGCAGGTGGAATGCCGAGCTCAGCTGGTTTGGCACCTTCCTTGTCTTCGATTCCTAATGGTCTGCCACCTATGCAAGGAATGCCACATAATTCCATTAATAGCTCAACAAGTCAAGTTTTACCTCCTCTTCTTGCAAGCAATCAGAGGCAGCTACAATCAAGACAACAGCAGCAGCAGCAACATCAAATTTTTCAACAGCAGTTGCACCAACAGCAACAGGCTCTTCTGAACAAGAAGCTTCAACAGCAGTCTCAATTACAGCCATCACTTCTTCAACAGCAACAATCAGCCTTGCCACAGAGTCAGCTCCAGCCATCGCAGCAGGCTATGCTACAACCAGCTCAACAACCTGCTCTCCAATCAACTCAACAGTCTATTCTACAGCAATCCCAGCCCTCTATTCTACAACCTGCTCAACAATCTGTCCTTCAGTCAACTCAGCAATCTGCTCTACAACAAGCATCTCAGACTCCCCTTCAGCAGCATCAGCAATCTATGCTTAGGCAGCAACAATCACAGCAATCTGTTATACAACA

Fln Alignment:

sp_v1.1_unigene23067___METNNWRNEESRQKIVNKIMDTLQRHMPQTGADGMNELKKI---ALRFEEKIYTVAISQQDYLRRISLKMLSLESKANGP-SNHFPGSSPGNNQRPLD
D5ACM4_______________MDTNNWRNDESRQRIVNKINNILQRHVPQGSLDGMNKLVKIASLASRFEEKIFTIAINQQDYIRRISLKMLSLESKVTAPLGNHFLGSSFGNNQRPLN

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
214		85	14		0.993533
216		71		28	1.0
327	20			80	0.995493
341		12		87	0.992554
345	12			87	0.992554
346		12		87	0.992554
348		12	87		0.992554
349	12	87			0.992554
360	12		87		0.992554
375		87		12	0.992554
381	87		12		0.992554
383	12		87		0.992554
390	87	12			0.992554
676		66		33	0.997452
724	75	25			0.996473
732	75		25		0.996473
769		25		75	0.996473
786	80	20			0.995493
787	80		20		0.995493
790	80		20		0.995493
791	80			20	0.995493
795	80	20			0.995493
796	80			20	0.995493
797		80		20	0.995493
798	80		20		0.995493
801	80			20	0.995493
808			80	20	0.995493
818	83	16			0.994512
819	33		16	50	1.0
821		20		80	0.995493
822			20	80	0.995493
824		80	20		0.995493
826	80	20			0.995493
828	75		25		0.996473
831	75			25	0.996473
834		25		75	0.996473
835	25		75		0.996473
837	75			25	0.996473
877	75		25		0.996473
892	75		25		0.996473
925		75	25		0.996473
948		92		7	0.999602
1028		7		92	0.999664

SSRs (tot: 1)

Start position	End position	Sequence	Length
794	807	CAG CAG CAG CAG CA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain