SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23064

Length: 1079 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23064

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H1 linker n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTA3_PHYPA	-	-	3.0e-23	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	histone h1-like protein	-	-	5.62253e-23	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histone H1/H5	IPR005818	-	5.62253e-23	62%
Blast2go	Histone H5	IPR005819	-	5.62253e-23	62%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	5.62253e-23	62%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV40

Fln msg: STOP codon was not found. Distance to subject end: 50 aas, your sequence is longer than subject: 289 - 239

Fln protein: MAVTANVSRKSGRVAAKEASKPRESKQQPKLKKTMSVDAKSEKKKKQPAASGSQRAHPPYFQMAVEAIATLRERNGSSRRAIAKYIEAHYKSDLPSNFKKLLTNQLRILSEKGKLVQVKRSFKLTEELKKSSQVKAIKAATKPPAASSGKPVDAKKPKPAEPAQAKKQTVSAKSPKPKAAEKPKAKAAVKPKAKAVSEKKSAPPPAPAPAPAPAPAPPVSTPKVQKTASLVSVKKEKPSSSKAAKSKPVKTSTPAKSTPAPRKSPRGAPPAAASKKPITSPPPKKKKTA

Protein Length: 290

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTATTCCGGTTTATTTTTTACCGATAAAATTATTAAGATAAGGGTTTTACAAGTATTTTCCTCAGGGTTTTAAGTTTAAAAGAGGAGGGTTTAAGTTCAAATCACAACACGCAACTTCGAACTTATCCCCCCTCTACAGAAGCCAGTTGGAGTTTAACTGAGAGCGCGGGTTCTGTAAAATCGTCA_-_ATGGCGGTCACTGCAAATGTTTCAAGGAAGAGCGGCAGGGTAGCTGCGAAAGAGGCCTCTAAGCCCAGAGAAAGCAAGCAGCAGCCGAAACTCAAGAAAACAATGTCGGTTGATGCGAAATCCGAGAAGAAGAAGAAGCAACCAGCAGCTTCCGGTTCGCAGCGCGCTCACCCTCCATACTTTCAGATGGCCGTGGAGGCCATTGCTACTCTGAGAGAGCGCAACGGTTCAAGTCGCCGGGCCATTGCGAAGTACATTGAAGCGCACTACAAGAGCGACCTGCCATCCAATTTCAAGAAGCTGTTGACTAACCAGCTGAGAATTCTGTCTGAAAAGGGCAAGCTTGTGCAAGTCAAGCGCTCTTTTAAGCTCACTGAGGAGCTCAAGAAGTCTTCCCAGGTGAAGGCCATCAAGGCCGCCACTAAACCGCCTGCTGCTTCTTCAGGGAAGCCAGTTGACGCGAAGAAGCCCAAGCCCGCAGAGCCAGCCCAGGCTAAGAAGCAGACCGTTTCCGCAAAATCTCCCAAGCCCAAAGCGGCGGAAAAACCGAAGGCAAAGGCCGCTGTTAAGCCGAAGGCAAAAGCTGTTTCCGAAAAGAAATCGGCCCCCCCTCCGGCCCCGGCTCCGGCTCCGGCTCCGGCCCCGGCTCCTCCGGTTTCTACCCCAAAGGTTCAGAAGACCGCTTCCCTCGTTTCAGTAAAGAAAGAGAAACCCTCGTCCTCAAAGGCGGCCAAGTCGAAACCGGTCAAGACATCGACTCCTGCCAAGTCCACTCCTGCACCGAGAAAATCTCCGAGAGGCGCTCCCCCTGCTGCTGCTTCCAAGAAGCCCATCACCAGCCCCCCTCCGAAGAAGAAGAAGACCGCC

Fln Alignment:

sp_v1.1_unigene23064___PRESKQQPKLKKTMSVDAKSEKKKKQPAASGSQR--AHPPYFQMAVEAIATLRERNGSSRRAIAKYIEAHYKSDLPSNFKKLLTNQLRILSEKGKLVQVKRSFKLTEELKK
A9NV40_______________PKTTEEKP-VKAPKEKKAKTPKEKKPKAAKGSKPPPAHPPYFQMISEAITALKERGGSSPYAIAKFMSEKYKSDLPPVFKKKLTVQLRNLTNSGKLTKVKGSYKLAEKEKK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
321	33		66		1.0

SSRs (tot: 3)

Start position	End position	Sequence	Length
337	350	AGA AGA AGA AGA AG	14
831	853	CCGGCT CCGGCT CCGGCT CCGGC	23
1061	1074	GAA GAA GAA GAA GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain