SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23059

Length: 1164 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23059

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tonoplast intrinsic protein n=7 Tax=rosids RepID=C9WSP9_HEVBR	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	tonoplast intrinsic protein	-	-	89%

Source	InterPros	Term	Type	Identity
Blast2go	Major intrinsic protein	IPR000425	-	89%
Blast2go	Aquaporin	IPR012269	-	89%
Blast2go	Major intrinsic protein, conserved site	IPR022357	-	89%
Blast2go	Aquaporin-like	IPR023271	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQU9

Fln msg:

Fln protein: MPFRGIAVGRPEEATHPEALKAALAEGISTLIFVFAGEGSGMAFDKLTSDASTTPAGLVAVALAHALGLFVAVAVGANISGGHVNPAVTFGAFVGGHITLLRGILYWFAQLIGATVACLLLKFTTGGLSTSAFSLSSGVGVGNAVVFEIVMTFGLVYTVYATAVDPKKGSLGIIAPICIGFIVGANILAGGAFDGASMNPARAFGPALVSWTWDNHWIYWVGPLLGGGLAAVIYELFMISPEPTHQPLPSNEY*

Protein Length: 255

Fln nts: ATGGGGAAAATAAGAGCGTTACAGAGAAGTCAGGTGTTCGAATCCTTTGCTGAAAGACTTTACACATTTCTTGGTTATA_-_ATGCCGTTCAGAGGAATTGCTGTGGGGAGGCCGGAGGAGGCCACCCACCCGGAAGCCCTGAAGGCCGCCCTCGCAGAGGGCATTTCCACGCTCATCTTCGTCTTCGCCGGCGAAGGATCCGGCATGGCTTTCGACAAACTTACAAGCGACGCTTCGACGACACCGGCTGGGTTGGTGGCCGTGGCTCTCGCGCATGCTCTAGGGCTCTTTGTGGCAGTGGCCGTTGGCGCCAACATCTCCGGAGGCCACGTTAACCCTGCAGTCACTTTCGGTGCGTTCGTCGGAGGGCACATCACGCTTCTAAGGGGTATTCTTTACTGGTTCGCACAGCTCATCGGCGCCACCGTTGCTTGCTTGTTGCTCAAGTTCACCACTGGTGGCCTGTCAACGTCCGCTTTCTCGTTGTCTTCGGGCGTGGGCGTGGGCAACGCTGTGGTGTTCGAGATAGTCATGACGTTCGGGTTGGTGTACACCGTGTACGCCACTGCAGTTGACCCGAAGAAGGGCAGCCTGGGCATCATTGCCCCGATCTGCATTGGCTTCATCGTGGGCGCCAACATACTGGCTGGCGGGGCCTTCGACGGCGCTTCGATGAACCCGGCGAGGGCATTCGGACCGGCGCTGGTGAGCTGGACGTGGGACAACCACTGGATTTACTGGGTCGGGCCACTTCTTGGAGGCGGTCTGGCTGCCGTTATCTACGAGCTGTTTATGATCTCCCCGGAGCCAACCCACCAACCGTTGCCCTCGAACGAGTACTGA___AATTGTTGCAAAGCGTTGTACAATAAAGTGGCTTCTTACAGGGCTACGTTGCGTTGTTGTGGGATCCTGGTCGATCTTGCCCTTTTCTGGCCAAGTGGACGCCATGGATGCTGTGATCAGGATGCATTTATGTGTGTGTGTGAATGGAAATTTATTGACTGGAGTGGAAATGAAAATGAATCATTGCTTTGTAATAATAACTGTTGATCTGTGAATGGAGTCTTGTTAATTCCTGAGAATGATTTTGAGGACTTAATGATAAAAGTTGCCTTTGATCCACTCTATTGAGTTGTAAAGGGTGCTGAAAGACTGTTTTCTCTTTC

Fln Alignment:

sp_v1.1_unigene23059___MPFRGIAVGRPEEATHPEALKAALAEGISTLIFVFAGEGSGMAFDKLTSDASTTPXXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGHITLLRGILYWFAQLIGATVACLLLKFTTGGLSTSAFSLSSGVGVGNAVVFEIVMTFGLVYTVYATAVDPKKGSLGIIAPICIGFIVGANILAGGAFDGASMNPARAFGPALVSWTWDNHWIYWVGPXXXXXXAAVIYELFMISPEPTHQPLPSNEY
A9NQU9_______________MPFRGIAVGRPEEATHPDALKAALAEGISTLIFVFAGEGSGMAFDKLTNDASTTPAGLVAVALAHALGLFVAVAVGANISGGHVNPAVTFGAFVGGHITLLRGILYWFAQLIGATVACLLLKFTTGGLSTSAFSLSSGVGVGNAVVFEIVMTFGLVYTVYATAIDPKKGSLGTIAPICIGFIVGANILAGGAFDGASMNPARAFGPALVSWTWENHWIYWVGPLLGGGLAGVIYELFMISPEPTHEPLPSNDY

SNPs (tot: 5)

Position	C %	G %	T %	Probability
754		8	91	1.0
755		89	8	0.999999
756	8	91		1.0
758	8	91		1.0
759	2	89	8	0.999999

SSRs (tot: 1)

Start position	End position	Sequence	Length
972	983	TG TG TG TG TG TG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain