SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23050

Length: 1471 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23050

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase n=2 Tax=Picea RepID=Q5W5I2_PICAB	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	peroxidase-like protein	-	-	76%

Source	InterPros	Term	Type	Identity
Blast2go	Plant peroxidase	IPR000823	-	76%
Blast2go	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	76%
Blast2go	Haem peroxidase	IPR010255	-	76%
Blast2go	Peroxidases heam-ligand binding site	IPR019793	-	76%
Blast2go	Peroxidase, active site	IPR019794	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9C9

Fln msg:

Fln protein: MAKFITALASVVLCVFMIYGGAVNALPSPVAGLSWTFYSSSCPSLESIVWQRMGSYLSADITQAAGLLRLHFHDCFVQGCDGSVLLNATSGEQTAPPNLSLRAQAFKIINDIKQNVEAACSGIVSCADILTLAARDSVVMAGGPFYPLPLGRRDSLTFANRSTVLANLPSPTSNVTGLISVLGPKGLNFTDLVALSGGHTIGRSNCSSFDNRLYNSTTGTQMRDPTMDQSFAKNLYLTCPTSTTVNTTKLDIRTPNLFDNKYYVDLRNRQTLFTSDQTLYTDTRTRDTVINFAVNQTLFFEQFVLSMLKMGQLDVLTGSEGEIRKNCWASNPSTFSIMDPEASQASTSYSM*

Protein Length: 353

Fln nts: AAACATTTTAGGAGTCAGATTGTTTTATTATCGCAGATGTACTGGTTTTTACTTGGATTTGGATATTTTTGCATCTGAGAGGCCAGTCGATTTCCTTCATTTGATCGACAGGATCGAAGATTCTATTCCACATCAAAGCAAAGCCAAATCTGTGGCCGAC_-_ATGGCCAAGTTTATCACGGCTCTCGCTTCTGTTGTTCTCTGCGTGTTTATGATCTATGGTGGCGCTGTGAACGCTCTGCCAAGTCCCGTGGCGGGTCTTTCTTGGACGTTCTACAGCTCGAGTTGCCCGTCCTTGGAGTCGATAGTGTGGCAGCGCATGGGATCCTATTTGAGTGCAGACATCACACAGGCTGCAGGTTTGTTAAGGCTTCACTTCCACGACTGCTTTGTCCAGGGATGCGATGGTTCGGTGTTGTTGAACGCAACGTCAGGTGAGCAGACGGCTCCCCCAAACCTATCACTCAGAGCGCAGGCTTTTAAGATTATCAACGACATCAAACAGAACGTCGAAGCCGCCTGCAGCGGAATTGTGTCGTGTGCCGACATTCTTACCTTAGCGGCTCGTGACTCCGTTGTAATGGCTGGAGGACCGTTCTACCCCTTACCACTCGGCCGCAGGGACAGCCTTACCTTCGCCAATCGATCGACCGTTCTTGCCAATTTGCCATCCCCAACCTCCAATGTAACAGGGCTTATCAGTGTTTTGGGTCCCAAAGGCTTGAATTTCACAGATCTGGTGGCCCTCTCAGGAGGACATACAATTGGCAGAAGCAACTGCTCCTCCTTCGACAACAGACTATATAACAGCACCACCGGTACACAAATGCGGGATCCCACGATGGACCAGAGTTTCGCTAAGAATCTTTATCTCACCTGCCCTACCAGTACCACCGTTAACACCACCAAATTGGATATTCGCACTCCCAATTTGTTCGACAACAAATACTACGTCGATCTCCGCAACCGACAGACCCTCTTCACTTCTGACCAGACTCTTTACACCGACACTCGAACCCGCGACACTGTCATCAACTTTGCCGTGAATCAGACCCTCTTCTTTGAACAGTTTGTGCTCAGCATGCTCAAAATGGGGCAGCTGGATGTGCTCACAGGAAGCGAGGGAGAGATCCGTAAGAACTGCTGGGCTTCGAATCCTTCAACATTTTCGATTATGGATCCAGAGGCGTCTCAAGCATCGACATCTTATTCCATGTGA___GATTAGGCTTCTCAGCGAATCTCAAATATAAGCAAGCAGCGTTAATTCCCAGCAAAGTCCAATAAATATATATATATAACCGGCATCTTGTAAACCCTTTGCGATGCTTGTTCTACAAATTACTTTTaACCTTCTGAAAGAGCAGAAATAGAGCATGAATACAGTGCACTCTCCTTGAAAATAAACAGCGTTTCTGGTTGATAATCAGATTTCCAACCGATTCGGGCAATTTCCAATAAGAAACTTTATTGAATT

Fln Alignment:

sp_v1.1_unigene23050___MAKFITALASVVLCVFMIYGGAVNALPSPVAGLSWTFYSSSCPSLESIVWQRMGSYLSADITQAAGLLRLHFHDCFVQGCDGSVLLNATSGEQTAPPNLSLRAQAFKIINDIKQNVEAACSGIVSCADILTLAARDSVVMAGGPFYPLPLGRRDSLTFANRSTVLANLPSPTSNVTGLISVLGPKGLNFTDLVALSGGHTIGRSNCSSFDNRLYNSTTGTQMRDPTMDQSFAKNLYLTCPTSTTVNTTKLDIRTPNLFDNKYYVDLRNRQTLFTSDQTLYTDTRTRDTVINFAVNQTLFFEQFVLSMLKMGQLDVLTGSEGEIRKNCWASNPSTFSIMDPEASQASTSYSM
D5A9C9_______________MAKHITPLASVILCMFVIYGGAVHSLPTPVAGLSWTFYSTSCPSLESIVRQRMGAYLSADITQAAGLLRLHFHDCFVQGCDGSVLLNSTSGEQTTPPNLSLRAQAFKIINDIKENVEAACSGIVSCADILALTARDSVVMAGGPFYPIPFGRRDSLTFANLSTTLANLPSPASNVTVLISVLGPKGLTFTDLVALSGGHTIGRSNCSSFQNRLYNTTTGISMQDSTLDQSFAKNLYLTCPTNTTVNTTNLDIRTPNVFDNKYYVDLLKEQTLFTSDQSLYTDTRTRDIVKSFALNQSLFFQQFVLSMLKMGQLDVLTGSEGEIRNNCWAANPSTYSIIDPEASQESSSYSM

SNPs (tot: 102)

Position	A %	C %	G %	T %	Probability
34		66		33	0.997452
35	66	33			0.997452
40	33			66	0.997452
41	66	33			0.997452
47		33		66	0.997452
49			33	66	0.997452
51		33		66	0.997452
56	33			66	0.997452
77		63		36	1.0
81			63	36	1.0
88		36	63		1.0
90		45		54	1.0
92	63	36			1.0
93	20			80	1.0
94	20			80	1.0
96		80	20		1.0
97		80		20	1.0
99		20		80	1.0
100	20	80			1.0
101	80			20	1.0
102	20			80	1.0
104	20			80	1.0
105	20		79		1.0
106	84	16			1.0
107			16	84	1.0
109	16		84		1.0
110	84		16		1.0
131	8	92			0.999718
132	88		12		1.0
303			84	15	1.0
416		11		88	0.923564
445			83	16	0.994512
447		20		80	0.995493
448		60	20	20	0.99255
449	20	80			0.995493
452		80		20	0.995493
453	60	20		20	0.99255
454	80		20		0.995493
455	80		20		0.995493
456	20	80			0.995493
457		83		16	0.994512
459	83		16		0.994512
461		83	16		0.994512
465		83		16	0.994512
466	83		16		0.994512
468	83	16			0.994512
469			83	16	0.994512
470		83	16		0.994512
471			83	16	0.994512
474		16	83		0.994512
475			83	16	0.994512
576	25			75	0.996473
786		50	50		1.0
841	80			20	0.995493
842		20		80	0.995493
848	80			20	0.995493
849			80	20	0.995493
850	75		25		0.996473
852		33		66	0.997452
856	33		66		0.997452
859	66	33			0.997452
889	60	40			1.0
890		60	40		1.0
891		60		40	1.0
898	60		40		1.0
899	60		40		1.0
901	60			40	1.0
902		40	40		1.0
904	80	20			0.995493
905	20	80			0.995493
906		20		40	1.0
922		83		16	0.994512
923	83	16			0.994512
924		83	16		0.994512
926		83	16		0.994512
927	16	83			0.994512
929	83	16			0.994512
933			16	83	0.994512
938	16		83		0.994512
939	83	16			0.994512
956	33		66		1.0
963			66	33	1.0
968	25	75			1.0
970	50		25	25	1.0
972	75		25		1.0
977		75		25	1.0
1026		72		18	0.999994
1030		81	18		0.999994
1042		72	18	9	0.999994
1053		81	18		0.999994
1087	18	81			0.999994
1108	23		69	7	1.0
1111		76	23		1.0
1151			25	75	1.0
1195	85		14		1.0
1197	14	85			1.0
1201	14		85		1.0
1210		14		85	1.0
1213		85		14	1.0
1230	15	84			1.0
1279		83		16	0.999991
1288	16			83	0.999991

SSRs (tot: 1)

Start position	End position	Sequence	Length
1282	1294	AT AT AT AT AT AT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain