SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23039

Length: 1096 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23039

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Caltractin n=1 Tax=Atriplex nummularia RepID=CATR_ATRNU	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	caltractin	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	88%

Source	InterPros	Term	Type	Identity
Blast2go	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	88%
Blast2go	Calcium-binding EF-hand	IPR002048	-	88%
Blast2go	EF-hand-like domain	IPR011992	-	88%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	88%
Blast2go	EF-hand	IPR018248	-	88%
Blast2go	EF-HAND 2	IPR018249	-	88%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	G %	T %	Probability
825		9	90	1.0
998		40	60	1.0
1003	14		85	0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain