SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23037

Length: 858 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23037

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl-[acyl-carrier-protein] desaturase n=1 Tax=Picea sitchensis RepID=A9NVD4_PICSI	-	-	71%
FL-Next	sp=Acyl-[acyl-carrier-protein] desaturase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	stearoyl-acp desaturase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Stearoyl-CoA 9-desaturase.	EC:1.14.19.1	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Biosynthesis of unsaturated fatty acids	01040		0.0	83%
Blast2go	Acyl-[acyl-carrier-protein] desaturase.	EC:1.14.19.2	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		0.0	83%
Blast2go	Biosynthesis of unsaturated fatty acids	01040		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	83%
Blast2go	defense response to virus	GO:0051607	Biological Process	83%
Blast2go	lipid biosynthetic process	GO:0008610	Biological Process	83%
Blast2go	fatty acid metabolic process	GO:0006631	Biological Process	83%
Blast2go	stearoyl-CoA 9-desaturase activity	GO:0004768	Molecular Function	83%
Blast2go	acyl-[acyl-carrier-protein] desaturase activity	GO:0045300	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Blast2go	Fatty acid desaturase, type 2	IPR005067	-	83%
Blast2go	Ferritin/ribonucleotide reductase-like	IPR009078	-	83%
Blast2go	Ribonucleotide reductase-related	IPR012348	-	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVD4

Fln msg: Distance to subject end: 131 aas, your sequence is shorter than subject: 277 - 412

Fln protein: MASAVYVAKCTPFSAPLPLFHGAKLRSSALRSNLARSHMVSMTPRKVEKIKIHFKPHEEKSRIHFQPHEPGQQVAHSMPPEKVEIFKSLEEWAEKNILIHLKPVENSWQPQDFLPDPSSEGFIDQLIELRERCNELPDDYLVCLVGNMITEEALPTYQTQINSYDGVRDETGASLTSWATWTRMWTAEENRHGDLLHKYLYLSGRVNMRQIEKTIQYLMGFGMYPGTENSPYLGFMYTSFQERATFISHDNTARFAKGYGDLKLAQICGTIAADEKR

Protein Length: 278

Fln nts: TTTCACTTCTGCTCACCAGAAAGAC_-_ATGGCGTCTGCTGTTTATGTTGCAAAATGCACACCATTCTCTGCGCCTTTGCCATTGTTTCACGGCGCCAAGCTTCGTTCTTCGGCCCTGCGCTCTAATTTGGCCAGATCGCATATGGTTTCCATGACCCCAAGGAAAGTTGAAAAGATCAAAATCCACTTCAAACCACATGAAGAAAAGAGCAGAATCCATTTCCAACCACATGAACCTGGCCAACAGGTGGCCCATTCCATGCCACCTGAGAAGGTTGAGATCTTTAAATCTCTAGAGGAGTGGGCAGAGAAAAATATACTGATTCATTTAAAGCCGGTTGAAAATTCTTGGCAACCACAAGATTTTTTGCCTGATCCTTCTTCTGAGGGCTTCATTGACCAACTTATAGAGTTGCGGGAGCGGTGCAATGAATTACCGGATGACTATTTAGTTTGTCTAGTGGGAAACATGATTACTGAAGAAGCATTGCCTACCTATCAGACTCAGATTAACTCATATGATGGTGTAAGAGATGAAACTGGTGCCAGTCTCACTTCATGGGCAACATGGACACGTATGTGGACAGCAGAGGAGAATAGACATGGCGATCTCCTTCATAAATATCTTTACTTGTCTGGCAGAGTGAACATGAGGCAGATTGAAAAAACCATCCAGTATCTTATGGGGTTTGGAATGTATCCAGGCACAGAAAATAGTCCCTATCTTGGATTCATGTACACTTCCTTCCAAGAAAGAGCAACATTCATATCACATGACAACACTGCAAGATTTGCTAAAGGATATGGTGACTTAAAATTAGCCCAAATATGTGGAACTATTGCTGCAGACGAGAAGCGCCA

Fln Alignment:

sp_v1.1_unigene23037___MASAVYVAKC------------TPFSAPLPLFHGXXXXXXXXXXXXXXXHMVSMTPRKVEKIKIHFKPHEEKSRIHFQPHEPGQQVAHSMPPEKVEIFKSLEEWAEKNILIHLKPVENSWQPQDFLPDPSSEGFIDQLIELRERCNELPDDYLVCLVGNMITEEALPTYQTQINSYDGVRDETGASLTSWATWTRMWTAEENRHGDLLHKYLYLSGRVNMRQIEKTIQYLMGFGMYPGTENSPYLGFMYTSFQERATFISHDNTARFAKGYGDLKLAQICGTIAADEKR
A9NVD4_______________MASAVCLVECMGALKYGCSSMAAGLLPPTPFFHGAKLGPANLGRS----HKVSMTTTVPPKAK-----EVGKSKIHFQPHEVQEQVTHSMPPEKVEIFNSLEDWAENNILIHLKSVEKSWQPQDFLPDPSSEGFIDEVKELRERSLELPDDYLVCLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWATWTRMWTAEENRHGDLLNKYLYLCGRVDMRQIEKTIQYLVGFGMDPRTENSPYLGFLYTSFQERATFISHGNTARFAKGCGDLKLAQICGTIAADEKR

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
352	40		60		1.0
358	40	60			1.0
360	80			20	0.995493
361	20			80	0.995493
381		60		40	1.0
493		80		20	0.995493
582		61		38	1.0
604		66		33	1.0
623	10	90			0.90298
637		90		10	0.90298
644	90		10		0.90298
652	12		62		1.0
661	85		14		0.993533
670	16	83			0.994512
676		16		83	0.994512
682			80	20	0.995493
685	20		80		0.995493
688		20		80	0.995493
698		80	20		0.995493
703		80		20	0.995493
705		80		20	0.995493
734	20		80		0.995493
741			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain