SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23031

Length: 1747 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23031

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Stromal cell-derived factor 2, putative n=1 Tax=Ricinus communis RepID=B9RNW9_RICCO	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	stromal cell-derived factor 2 precursor	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	88%
Blast2go	defense response to fungus	GO:0050832	Biological Process	88%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	MIR	IPR003608	-	0.0	88%
Blast2go	MIR motif	IPR016093	-	0.0	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU82

Fln msg:

Fln protein: MGISFLGIAALLLLLDLPLDQYSASPVAAASQQAEITYGTVLKLMHDRTKFRLHSHEVPYGSGSGQQSVTGFPNVDDSNSYWIVRPIPDSSDKQGDVITSGTIIRLQHMKTRKWLHSHLHLSPISGNLEVSCFGGDDQSDTGDYWRLEIEGKGKVWTQDQKIRLQHIDTGGYLHSHDKKYTRIVNGQQEVCAMTRKNSENIWLAAEGVYLPISNKK*

Protein Length: 218

Fln nts: ATGGGGGAGTTTTGACCTCCCGAAGTCTCCAAGTTTTGTCCTCTTGTTAGCAAAGATTAGTGAGTGAATATTACTTCAATTTCCCTGTTCGTTGGACGCCAAGCCATTCCGTGGTCAATGTTGCCAGAAAGAAGCAACAGCTAATGAGAGCTACACAAATGTCACCAACGAATCACAGACATCCACATGCACGCCCTCACACGTGTCCATAACCAATTGGCTCATTTATTTACACAGACGTGTTAGTTATAGCGTTCACTCCTATTTCCATATATATAATTTACATATTATGTATATGGTCACACATCTCAAACACATATTCCTAAATCTTCTCCTCTGAAACTTAAAACCCATTAATGAGGGAAAGCTTCAAATGAAGCAGAGCAAACGCAATTTAATAGTGCTTATTGGGTTGTGAACCTACAAAATAAATCAACTGTGTCCGCTCTGGATAACCAAATTGAAGGCACGGTGGCTCCGAAAGGGCAAGGAGCGTCTTCTTCATCACTTCACCACAGGCGCCTTGCTAATCCAGCTGTTGTTCATCGGCAACCGGGGAGTACCAGGATTGTTTACACCATACCCGCTAAGCTGCCCTTCTGGCACCAGACTTGGTTTCTCATCACATTGTTCGTA_-_ATGGGTATTTCTTTTCTGGGGATCGCCGCCCTGCTTCTCCTGTTGGATCTACCATTGGATCAGTATTCGGCTTCGCCTGTAGCAGCAGCAAGTCAACAAGCCGAGATTACCTATGGGACTGTTTTGAAGCTTATGCATGACCGGACGAAGTTTCGCTTACACTCACATGAAGTTCCATATGGGTCTGGAAGTGGGCAACAGTCTGTGACTGGTTTTCCAAATGTTGATGATTCCAATAGTTATTGGATTGTAAGACCGATACCTGATTCATCAGACAAACAAGGAGATGTAATTACGAGCGGAACAATTATTCGGTTGCAACACATGAAAACACGTAAATGGCTACACAGTCATTTGCATTTATCACCTATTTCTGGCAATTTGGAGGTTAGTTGCTTTGGAGGAGACGATCAGTCTGACACTGGAGACTATTGGAGGCTTGAGATTGAGGGCAAAGGGAAAGTATGGACGCAAGATCAAAAGATACGGTTACAACACATTGATACTGGTGGTTATCTGCACAGTCATGATAAGAAGTACACTCGAATAGTCAATGGTCAGCAGGAGGTTTGCGCCATGACAAGGAAAAATTCAGAAAATATATGGCTGGCTGCTGAAGGAGTGTATCTTCCAATTTCAAATAAAAAGTAA___CAAGGTGTCTGATAATGCGGAAATATTTTACAGGCATTTCTGTAGTGTTCTACTCTTAAAAGCTAGTTCAGAGTTTATAGGAGATGCCAATTTGTCTCTTGTAGAGAGAAACTGAGCATAAATTTTTTGTAAAGGAGCCAATTTACCACTGCTGTCTGCAAACTGAAATCATCATTGCAAGAGAGATTGAGAAAAATGCTTGTGACCGGTATTGTAAAATTTCAAATTTCTCATTTTAGGCTATATTTTTCACAAAGAATACTTAGACATCTAACAGTTCTAAATGAGTCTTATAGCATAAACTTGACAAGAGGAAAGCTATTCATCTAATATATAAGTGATCTCTATATTTCAAGGTTGCTATGTTACAAAAGAGAAAATTGAAAATAACTGTCTCCCACATTAGGCAGTCATACGACTTGCTGACCTTGAAATATACCAAGATGCTTTGACAGAATCA

Fln Alignment:

sp_v1.1_unigene23031___MGISFLGIAAXXXXXXXXXXXXXXXXXXXXXXXXEITYGTVLKLMHDRTKFRLHSHEVPYGSGSGQQSVTGFPNVDDSNSYWIVRPIPDSSDKQGDVITSGTIIRLQHMKTRKWLHSHLHLSPISGNLEVSCFGGDDQSDTGDYWRLEIEGKGKVWTQDQKIRLQHIDTGGYLHSHDKKYTRIVNGQQEVCAMTRKNSENIWLAAEGVYLPISNKK
A9NU82_______________MGISFLGIAALLLLLDLPLDQYSASPVAAASQQAEITYGTVLKLMHDRTKFRLHSHEVPYGSGSGQQSVTGFPNVDDSNSYWIVKPIPDSSDKQGDVITSGTVIRLQHMKTRRWLHSHLHASPISGNLEVSCFGGEDQSDTGDHWRLEIEGKGNVWMQDQKIRLLHLDTGGYLHSHDKKYTRIVGGQQEVCAITRKHPENIWLAAEGVYLPISNKK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
302	25		50	25	1.0
303		50	50		1.0
607	66	33			0.997452
760		12		87	1.0
848			8	91	1.0
938		93		6	0.999998
949			4	95	0.996252
952	4		95		0.996252
960		95	4		0.996599
1038		8	91		0.999807
1312	80			20	0.999996
1313	20			80	0.999996
1649		10	90		0.90298
1728		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain