SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23023

Length: 1399 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23023

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S8 n=4 Tax=Picea sitchensis RepID=A9NNT7_PICSI	-	-	73%
FL-Next	sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	40s ribosomal protein s8	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNT7

Fln msg:

Fln protein: MGISRDSLHKKRATGGKKKVWRKKRKYELGRQPSMTKLSSNKTVRRVRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYEQHYAQDIGRKKKAAAAAKKETTEEGEAAVEEEKKKSKHLLRKIEHRQEGHKLDPHLEEQFASGRLLAAIASRPGQCGRADGYILEGRELEFYNKKIQRKKGKGAGAA*

Protein Length: 224

Fln nts: CTTCTTCTATTTCGTAGTTGTCTTCCTAGGCATCATTACGAGAAGCCCGTTGCTCAGAACCAGGAGTTGACACAGTGGCAACTTGAGTTCCCTGACGATTGATTAGAGGCTGACGGAGGTTTTCACTAGAGAGGTGTTGTGAGTGGGAGAGGCAGAGAGGTGTTGCGTGTTGGAGAGGGGGAGTAGCTAAGGTCAGGCGGCGGCGCGGTCCGATCTTGAAAGCCATCTGCAGGCGTTCCGGCCGATTCTGAAACC_-_ATGGGTATCTCACGGGATTCACTTCACAAGAAACGTGCGACTGGAGGGAAGAAGAAGGTCTGGAGGAAAAAGCGAAAGTATGAGTTGGGCAGACAGCCTTCAATGACGAAACTGTCTAGTAACAAGACCGTGAGAAGGGTGCGTGTGAGAGGAGGTAATGTAAAGTGGAGGGCTTTGAGACTCGATACTGGTAACTTTTCTTGGGGTTCTGAGGCTGTGACTCGCAAGACTCGTATATTAGACGTGGTTTACAATGCATCTAATAATGAGCTTGTCAGAACCCAGACTTTGGTAAAGAGTGCCATTATTCAGGTTGATGCTGCTCCTTTCCGTCAGTGGTATGAACAGCACTACGCTCAGGATATTGGCAGGAAGAAGAAGGCTGCTGCTGCTGCCAAGAAAGAGACTACCGAGGAGGGAGAAGCTGCAGTCGAGGAGGAGAAGAAAAAAAGCAAACATCTTTTGAGGAAGATTGAGCATCGACAAGAAGGTCACAAACTTGACCCACATCTGGAAGAGCAGTTTGCTAGTGGTCGTCTTTTGGCTGCAATTGCTTCACGTCCAGGCCAATGTGGACGTGCTGATGGGTATATTCTTGAGGGTCGGGAGCTTGAGTTTTACAATAAAAAGATTCAGAGAAAGAAGGGCAAGGGAGCCGGTGCTGCTTAA___AAGCAAGCAAATTTTGCTTCTTGAGATTCTTAGCATCTTTGTTCACAATGTTTAGTGTTGGCCCTGGGTAACATCAAAAGAGCTTTATGGTTAGGTTTGAGGATAATTTTTTGTGGTAACTGGTCACGCTTCTATTTGCATTTGTTAGTTCTTTCAACTGAGTGGAGTATAATAATTAAAAATTTGTTAGATGGCTGGATTTTTTTAATTTATTTTCTATTTTAAATGGAATGTCACACTGAAGAACCATTTTGTATTAAGCTTCAAAGTATCTGTAGCAAGTTAATATTTTCTTCCGAGATTTGTAGGGAGTGCATTTAAGACCTTTTTTTGAAACAGAGGCATGCATTTTTAGTTATACCAAAGCAAGTTTACATTTATATCTGATTGTTTCACAAATGAACTGTTCTTATCTAGCTGTGATTCTGTTTGATACGAAAGGGCCCTTTTTGCAATATGAAGTTTGGAATAAGAT

Fln Alignment:

sp_v1.1_unigene23023___MGISRDSLHKKRATGGXXXXXXXXXXYELGRQPSMTKLSSNKTXXXXXXXXXXXKWRALRLDTGNFSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYEQHYAQDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLLRKIEHRQEGHKLDPHLEEQFASGRLLAAIASRPGQCGRADGYILEGRELEFYNKKIQR
A9NNT7_______________MGISRDSLHKKRATGGKKKVWRKKRKYELGRQPSMTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYEQHYGLDIGRKKKAAAAAKKETTEEGEATAEEEKKKSKHLLKKIEKRQEGHKLDSHLEEQFASGRLLAAIASRPGQCGRADGYILEGRELEFYLKKIQR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
119	33		66		1.0
121			33	66	1.0
122			66	33	0.997452
124		33	33	33	0.997753
125		33	33	33	0.997753
127		33	33	33	0.997753
132			42	57	1.0
146			75	25	1.0
1053	13		86		1.0
1064		95		4	0.994598
1131	22			77	0.999999
1170	16		84		1.0
1183		22		77	1.0
1198		7		92	0.999664
1257			22	77	0.999999

SSRs (tot: 1)

Start position	End position	Sequence	Length
637	650	GCT GCT GCT GCT GC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain