SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23020

Length: 1255 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23020

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SAP domain-containing protein	-	-	2.0e-29	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	sap domain-containing protein	-	-	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA-binding SAP	IPR003034	-	0.0	70%
Blast2go	Ubiquitin ligase, Det1/DDB1-complexing	IPR018276	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKA8

Fln msg:

Fln protein: MAAKDSGCSASSSPPPSNSGATQYLKDLPSRGFFTNVIPSSSPGGLRVYICDHDTSPPENQIIKTDSTNILIRSLTLNKSKGDSKLKDVNGKTAADTSKGKRPAERPAEEKMLAKRASTGSNPGSSKKEGGSVHLSDREIQMSTVDRLRSLLRERGLSTKGKKEELIARLRQ*PLAIGVKNLLDACNKNLVSDYDKDYFASFVL*

Protein Length: 206

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATACCGCATAATATTCGTTTTTTCTTTTGCTCGTCTTCCCATAATTGCTTTATTTATTTATCCATAGATGTATAATGGGCCCAGGCGATCACTAAAATGTTACTGTCGTCCGAGTTAAAAATTCAAGTGTTCCATTCACTCTCTCTATTTGCAACAGGAAGACTATACGCCCGCCATAATAGACATCTTTTGCATTCTTCGTTCCAATAGACTGCAACTGGACATAAGTTTACTTTCTTACTGCAAAGCCTCTGGAGTGGCCTCTACGCTATTGAAATAACATCTTGGAGGTCAATCTGCTTTCGAATTCGGACATATACATTCTTACAGCGATCATCAATTCCA_-_ATGGCGGCAAAGGACTCCGGCTGTTCTGCTTCTTCTTCTCCACCTCCTTCAAATTCTGGGGCTACGCAATATTTGAAGGACCTTCCTTCACGAGGGTTTTTCACCAACGTCATTCCATCTTCCTCGCCGGGTGGATTGCGAGTATATATCTGTGATCACGACACATCACCTCCAGAAAACCAAATCATCAAGACCGATTCCACAAATATTTTGATCAGATCTCTCACTCTAAATAAATCAAAGGGCGATTCCAAACTTAAAGATGTTAATGGCAAGACTGCAGCTGATACCAGTAAGGGAAAAAGGCCAGCAGAAAGACCTGCAGAAGAAAAAATGCTTGCAAAGAGAGCCAGTACAGGCAGTAATCCTGGCAGTTCCAAGAAAGAGGGAGGTTCAGTCCATCTATCCGACAGGGAGATTCAAATGAGTACAGTGGATAGACTTCGTTCTCTTTTAAGAGAGAGGGGTTTGTCGACAAAAGGGAAAAAGGAGGAACTCATTGCCCGGCTAAGGCAGTAACCACTTGCAATAGGAGTGAAAAATTTGTTAGATGCTTGCAACAAGAACCTAGTCAGCGACTATGACAAAGACTACTTTGCTTCATTTGTTCTATAA___ATTGACTCTTAACACCTTCTTAGGTCTAGAAATACCTATTTTGTACTTTTAAAGGATTATTCAACTGAATGCACTCCTTTCGTCTTAAATGATTTAAGCACTGCTTTTCCATCCAAGAGATTTTTATGGATGGAAACCTTACACTGTTTCAGGTGTGAATATATGTTCCATGTACTTTAATAGGACTAGTCAAATTTTTTGTTTGTTTATTTCTTACCTTGGGTATCAAAAGAAAGGCTTCTCTCCGACGCTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene23020___QYLKDLPSRGFFTNVIPSSSPGGLRVYICDHDTSPPENQIIKTDSTNILIRSLTLNKSKGDSKLKDVNGKTAADTSKGKRPAERPAEEKMLAKRASTGSNPGSSKKEGGSVHLSDREIQMSTVDXXXXXXXXXXXXTKGKKEELIARLRQ*PLAIGVKNLLDACNKN
A9NKA8_______________QYLKDLPSRGFFANAVPSSSPGGLRVYICDHDTSPPENQIIKTDSTNILIRSLTLNKSKGDSKLKDVNGRTAAENSKGKRPAERPADEKLIAKKASTGSNPGSSKKEGGSIQLSDREIQMSTVERLRSLLRERGLSTKGKKEELIARLRQESLAVGAKNSSNSCNKN

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
431		83		16	0.994512
452		25		75	0.996473
477		75		25	0.996473
508	25	75			0.996473
664	84		15		0.999986
847	85			14	0.993533
848	85		14		0.993533
849	85		14		0.993533
855	85			14	0.993533
856	71			14	0.984337
857	85	14			0.993533
859		14	85		0.993533
1083		81		18	1.0
1121		83		16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
73	85	TTTA TTTA TTTA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain