SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene23012

Length: 1693 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene23012

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Structural constituent of cell wall, putative n=1 Tax=Ricinus communis RepID=B9SWC5_RICCO	-	-	53%
FL-Next	tr=Late embryogenesis abundant protein; Picea glauca (White spruce) (Pinus glauca).	-	-	45%
Blast2go	structural constituent of cell	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Root cap	IPR009646	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q40862

Fln msg: your sequence is longer than subject: 356 - 320

Fln protein: MAFFQMAMIYYSAAMVICLASMAVLCQGQSSDQVQNYRMLPTSRVTGRERAICEGAYSRCYGIVLSCPAQCPVRKPIKAKKVKGCMIDCSKCETSCKFRKPNCKGYGSICYDPRFVGGDGVMFYFHGMKDRDFALVSDDKLQINAHFIGTRPEGRKRDYTWVQALGIMFGAKAHTFTVGANKVSKWDDSVDQFTFSFDGQDLKVADTWTSPCGQLILERTDETNSVNVILRGLARISLNVAPIEERDNIMHNYQLPPNDAFAHLEMQFKFFNLSSTVEGILGQTYRPNFMNPVKRGVPMPVMGGEDRYATSSLLSADCKSCNYSFSSSEFIFNPVGTFDAECTSRSGNGGIVCRR*

Protein Length: 357

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGGCTTCGCTATTACAGTTTTATAATTAATTATAAGCGTGCCCGGCGCCAGGATCTCTGCGAATAACACGAGGCTGCGCCGGTGGCTTCACGCTGAATTGATTCCCTCCACAGCAAATGTGTGCTTGGAACAGGGGATTTTAGTGGCAATTTTAGCTTAAG_-_ATGGCTTTCTTCCAAATGGCAATGATATATTACTCTGCGGCAATGGTTATTTGCTTAGCAAGTATGGCGGTGTTGTGTCAGGGGCAAAGCAGTGATCAGGTGCAGAATTACAGAATGCTACCGACTTCGAGAGTGACGGGACGGGAAAGAGCGATATGCGAAGGCGCTTACAGTCGATGCTATGGGATCGTCCTCTCATGCCCTGCTCAATGCCCCGTCCGCAAACCCATAAAAGCCAAGAAGGTTAAAGGATGCATGATCGATTGCAGTAAATGCGAGACTTCATGTAAATTTCGGAAGCCTAACTGCAAGGGCTACGGATCAATCTGCTACGATCCCCGTTTCGTGGGTGGAGACGGAGTAATGTTCTACTTCCACGGAATGAAGGACCGAGACTTCGCTCTCGTATCAGACGACAAACTTCAGATCAATGCCCACTTCATCGGCACCAGACCAGAGGGAAGGAAGCGAGACTACACCTGGGTTCAGGCACTCGGCATCATGTTCGGAGCCAAAGCCCACACTTTCACTGTGGGAGCCAACAAGGTCTCCAAATGGGACGACTCAGTCGATCAATTCACCTTCTCCTTCGATGGGCAGGACCTCAAAGTGGCAGACACCTGGACTTCCCCGTGCGGCCAACTCATCCTGGAACGAACCGATGAGACCAACAGCGTGAATGTGATTCTTCGGGGATTAGCCCGCATTTCTCTAAACGTTGCCCCCATCGAGGAACGAGACAACATAATGCACAACTACCAGCTCCCGCCCAATGATGCCTTCGCCCATCTGGAAATGCAATTCAAGTTCTTCAATCTCTCATCCACCGTGGAAGGCATTTTGGGGCAGACCTACAGACCAAATTTCATGAACCCTGTGAAGAGAGGAGTCCCCATGCCCGTCATGGGAGGAGAAGACAGGTACGCCACCTCCTCCCTCCTCTCCGCCGACTGCAAATCCTGCAACTACTCCTTTTCCTCCTCCGAATTCATCTTCAATCCAGTCGGGACCTTCGACGCGGAGTGCACCAGCCGCAGTGGGAATGGCGGTATCGTATGCCGCAGGTAA___TTTGAATAAATCCCTTCATTAAGGGAAGGGAACACATCGATAAATAAATTGTCACAGGAAATAATTTCATGTAGTTTATCTCCCAATGAGACTTCAGACTTATAATATCCCTTGATAAATTCTCTCTGTCATCCCCTAAATAATGATGGACTGCAAGTCCTGGTCCCATCAGATCAATATAGAAATATTTTTAAAATCTCAGATAATGTATGTTTTTGAAATATTTTATGTAGTGTATTATTGTTTTGTTTGTGTGTCTTAGTGGGGTGGAATATTGTGTAACCAACCATGGCACTGGAATCTCAGTTGCGAGGAAAACTCCATGCATCTAACATTTCATAAACTCCATGCATTATCGGAAGTTTCATAAAAATTTACTAATTGAATTTGTATCTTTGTAGCCACCTATTCTAAACAGAAAGTTTCCATTATGTGCAA

Fln Alignment:

sp_v1.1_unigene23012___YSRCYGIVLSCPAQCPVRKPIKAKKVKGCMIDCSKCETSCKFRKPNCKGYGSICYDPRFVGGDGVMFYFHGMKDRDFALVSDDKLQINAHFIGTRPEGRKRDYTWVQALGIMFGAKAHTFTVGANKVSKWDDSVDQFTFSFDGQDLKV----ADTWTSPCGQLILERTDETNSVNVILRGLARISLNVAPIEERDNIMHNYQ-LPPNDAFAHLEMQFKFFNLSSTVEGILGQTYRPNFMNPVKRGVPMPVMGGEDRYATSSLLSADCKSCNYSFSSSEFIFNPVGTFDAECTSRSGNG-GIVCRR
Q40862_______________YPRCYGYQYDCPANCPYN----------CDMDCKTCKTVCPCDKP-----GGVCQDPRFIGGDGIMFYFHGKRDQDFCLISDSNLHINAHFIGKRGQGMGRDFTWVQSIGVLL-EDGRQFYLGAKKVSTWDNSVDQLTMALNGQTLTLPPGEGATWATASG-LNVTRSDRANEVVVQVEDKLKISARVVPISEEESRVHNYGIIAGEDCFAHLELSFKFYSLSPNVSGVLGQTYGAEYRSPVKMGVAMPIMGGESNYVTSNLFAADCKVARFASSSDD---EYAITSALDCNSGRGSGHGIVSRR

SNPs (tot: 123)

Position	A %	C %	G %	T %	Probability
128			33	66	0.997452
131		66	33		0.997452
134	33			66	0.997452
137	33			66	1.0
138		66		33	0.997452
139	66		33		0.997452
142	66			33	0.997452
143	66		33		0.997452
144	66			33	0.997452
146		33		66	0.997452
147	66		33		0.997452
148		66		33	0.997452
149	33		33	33	0.997753
150		33	33	33	0.997753
151	33	33	33		0.997753
153	33			66	1.0
154	33			66	1.0
156		33	66		1.0
157	33		66		1.0
158	33		66		1.0
159		33		66	1.0
160	33		66		1.0
215		3		96	0.986325
216	96		3		0.986325
218	96	3			0.986325
219			3	96	0.986325
223		3		96	0.987242
224		96		3	0.986325
228			96	3	0.986325
232	96	3			0.986325
570	90			10	0.90298
571	90			10	0.90298
572		10		90	0.90298
574	90	10			0.90298
579		90	10		0.90298
580		90		10	0.90298
583		10	90		0.90298
586		10		90	0.90298
587	10			90	0.90298
588	11	88			0.923564
590		88	11		0.923564
593	11			88	0.923564
596	10			90	0.90298
597	80	20			0.999996
598			20	80	0.999996
599		88		11	0.923564
604		11	88		0.923564
605	88			11	0.923564
606		88		11	0.923564
607	88		11		0.923564
608	88		11		0.923564
615		11	88		0.923564
626	88		11		0.923564
627		88		11	0.923564
629		11		88	0.923564
632			11	88	0.923564
633		88		11	0.923564
636		77		22	0.999999
637	77		11	11	0.968132
638	11	88			0.923564
642	75			12	0.975346
643		87	12		0.992554
647	85			14	0.993533
649	14		85		0.993533
650		14	71	14	0.984337
651	85	14			0.993533
652	85		14		0.993533
653		28	71		1.0
654		14	85		0.993533
656	85	14			0.993533
660	83			16	0.994512
661		16	83		0.994512
664			16	83	0.994512
665	83			16	0.994512
667	66		33		1.0
669	20	40		40	1.0
672	20		80		0.995493
675			20	80	0.995493
679		20	80		0.995493
682	20	80			0.995493
683			20	80	0.995493
686			80	20	0.995493
689		20		80	0.995493
690		80	20		0.995493
692		20		80	0.995493
701		50	50		1.0
847	87	12			0.992554
904	90		10		0.90298
906	90	10			0.90298
908			90	10	0.90298
910			10	90	0.90298
913		10		90	0.90298
914		90	10		0.90298
915		90		10	0.90298
920	10		90		0.90298
1012	85		10	5	0.999793
1018		90		10	0.999898
1020	5			85	0.999793
1140	91			8	0.999766
1144		91		8	0.999766
1145	91		8		0.999766
1147	91	8			0.999807
1150		90		9	0.999872
1154	90			9	0.999872
1155	90		9		0.999872
1156		90		9	0.999872
1157		9		90	0.999872
1162	10	90			0.999898
1222		21		78	1.0
1264	72	28			1.0
1276	61		38		1.0
1343	40	60			1.0
1349	40		60		1.0
1353		45	54		1.0
1355			54	45	1.0
1381		44		55	1.0
1423		50	50		1.0
1433		53	46		1.0
1450	16		33	50	1.0
1456	40	60			1.0
1465		40		60	1.0
1474	25			75	0.996473
1476			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain