SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22999

Length: 2381 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22999
CGTCGTGACCTTGGCTGTCACTCAATCCGTCGTGACCTTGGCTGTCACTCAATTCCAATTGTTTTTTTCCTCTGTTTTCTCTCCTCATTCTTTTCAAAATCGAAGGCCCTAAACAAACACCTACGCTTTCTTAGAGGTGGTTGGGATTTATACGCCACTGTTGGGAAGTAAGTCTTTGACTCATGAGGGAGAATGTAGAATGTTGAGCCCGCGGGCATCGTCGATCAAATGGGCTGAATCTGAATCCATTTCTTCTGTGGGGATCACGCCAGGATGGGATAGCAGAACCCGAAAAAAGTAAGCAAAAATATATTGGAAACAACATAGAAAATAGAATATTAGGTGCCAGGGGATTACTGGTTTCCTCATAGCCGAAACTTTTCCGGATCTCAATGGAGCCACTGGTGGGAGATAAGTACAGATTGGGGCGCAAAATTGGCAGCGGTTCATTCGGAGAAATCTATCTCGGAGTAAATATTCAGACAAATGAGGAAGTGGCCATAAAACTGGAGAATGCAAAAACAAAGCACCCACAACTTCTATATGAGTCCAAATTGTACAAGATTCTCCAAGGAGGAACTGGTGTTCCGAATATAAGATGGTCCGGTGTTGAAGGTGATTATAATGTCATGGTCATAGATATACTTGGACCTAGTCTCGAGGATTTATTTAACTACTGCAACCGGAAATTCTCATTGAAGACTGTTCTGATGCTTGCTGATCAACTGATTAACAGGATTGAATATGTGCATTCAAAGAGTTTCCTTCATCGAGATATTAAGCCTGACAATTTCCTTATGGGGCTTGGCCGCAGAGCAAATCAGTGTTACATCATAGATTTTGGGCTTGCCAAAAAATATCGGGACCCAGCAACTCATAAGCATATTCCTTACAGGGAAAATAAAAATCTTACAGGGACTGCTCGTTATGCTAGCATCAATACTCATCTTGGAATAGAGCAAAGCAGAAGAGATGATCTTGAATCTTTGGGCTATGTGCTGATGTACTTCTTAAGGGGGAGCCTTCCGTGGCAGGGTTTAAAAGCAGGGACTAAGAAGCAAAAGTATGACAAAATAAGTGAAAAGAAAGTCTCCACTTCAATTGAGGTTTTGTGTAGGTCTTACCCACCGGAGTTTGCCTCATATTTCCATTACTGCCGTGCATTGCGCTTTGATGACAAGCCAGATTATGCATACTTAAAGAGGATGTTCCGTGACTTGTTCATGCGAGAAGGTTTTAAGTCTGATTATGTTTTTGACTGGACTATCTTGAAGTACCAACAAACCCAAATTGCTGCTAGTCCTCGATCAACTCCTATTCTTGGAGCTGGAAAATCTGGTATAGCAGGTCTTACAGAAAGATTTTCAGCTGGACAAGAGGGCCATGCAGGAACCTCTCGAGCAGCCGAAGGGTTTAATCGGAGATCTAGTGGAGTCAATGGTATAGCTTTGAATCGAGCCGGAAGCCAATCTAAGTACAAGAGCTCTGGACAAGATGGCCCTTCAACATCCAAGAGAGTGGGAGTAGAAAATGAGCGTGGAAGTTCCACTATGCGAACTGGAAGCACGTCAAGGAGAGCAGTTCTTTCAAGCAGGCCAACTGTTTCAGCTGAGAGTGGTGAACAATCTCGTTCACTAAGCAATTTTCTTCCTTCAAGTCTTCGTTCTTCAGGTTCTGCAGCTGAGCCCAAGAGATCTTCAATATCGAGAAATCCATCTATGAGGAGTCAACAAGAGAATTGTTTAAGAAATTTCCAGCTACTCTCTGTAGATTCACAACAACATAGGAGGTGACTGATTTTTTAATGTGTGAGAGCAGTTTTACAGTGGAGTTGCTGTTCAGATAAGGAATATGCTTTCCTGATCAACTCTGCTGCCTAAAAGTTTCTTTATGTCAGCTTCTTGAAATGTGAGAGCTTTTTAAGAGGTACAAGGGATGTTGAGTTTCTTGGAATTTGCAGACATTAGTTCTGTAACTTGCAGGTAAATAGCAAACCAGTGTGTATGTAACTAGGGAGTTATCTCCTTTGCTGCATCAAGCAGCTATTGATTTGATTCTATTAAATTGTTGAAGGGTATAGTCAATTTGCAGTGGTTGGAATGAAATTATAACATGTGAGCCTAAATGGCCACATTGGATTTGGTTATTTGACCTGTAAGATGCACGTCAAAGTTTTCATTTACCAAGTCTTGCAGAAAAGCTATGATCCGTTATTCCTTGCTAGAAATAATCCTATGTTTTGAAGTTCATGTTGCCTCTTCAAAATGAGAAGGATTTAACGTTTATTCATCTTAAAATAGACATTGTTTTTTGTCAAGGGACCTTTGCTTGGCAGTAGCCATACATAGTTTTTCAAGAATATCAAAGTCATTTTTTCCCAT

Ace file of the UniGene sp_v1.1_unigene22999

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Casein kinase n=1 Tax=Beta vulgaris RepID=A2I5G0_BETVU	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	protein	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	77%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	77%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	77%
Blast2go	Protein kinase-like domain	IPR011009	-	77%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	77%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	77%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUC1

Fln msg:

Fln protein: MEPLVGDKYRLGRKIGSGSFGEIYLGVNIQTNEEVAIKLENAKTKHPQLLYESKLYKILQGGTGVPNIRWSGVEGDYNVMVIDILGPSLEDLFNYCNRKFSLKTVLMLADQLINRIEYVHSKSFLHRDIKPDNFLMGLGRRANQCYIIDFGLAKKYRDPATHKHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKVSTSIEVLCRSYPPEFASYFHYCRALRFDDKPDYAYLKRMFRDLFMREGFKSDYVFDWTILKYQQTQIAASPRSTPILGAGKSGIAGLTERFSAGQEGHAGTSRAAEGFNRRSSGVNGIALNRAGSQSKYKSSGQDGPSTSKRVGVENERGSSTMRTGSTSRRAVLSSRPTVSAESGEQSRSLSNFLPSSLRSSGSAAEPKRSSISRNPSMRSQQENCLRNFQLLSVDSQQHRR*

Protein Length: 468

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCGTCGTGACCTTGGCTGTCACTCAATTCCAATTGTTTTTTTCCTCTGTTTTCTCTCCTCATTCTTTTCAAAATCGAAGGCCCTAAACAAACACCTACGCTTTCTTAGAGGTGGTTGGGATTTATACGCCACTGTTGGGAAGTAAGTCTTTGACTCATGAGGGAGAATGTAGAATGTTGAGCCCGCGGGCATCGTCGATCAAATGGGCTGAATCTGAATCCATTTCTTCTGTGGGGATCACGCCAGGATGGGATAGCAGAACCCGAAAAAAGTAAGCAAAAATATATTGGAAACAACATAGAAAATAGAATATTAGGTGCCAGGGGATTACTGGTTTCCTCATAGCCGAAACTTTTCCGGATCTCA_-_ATGGAGCCACTGGTGGGAGATAAGTACAGATTGGGGCGCAAAATTGGCAGCGGTTCATTCGGAGAAATCTATCTCGGAGTAAATATTCAGACAAATGAGGAAGTGGCCATAAAACTGGAGAATGCAAAAACAAAGCACCCACAACTTCTATATGAGTCCAAATTGTACAAGATTCTCCAAGGAGGAACTGGTGTTCCGAATATAAGATGGTCCGGTGTTGAAGGTGATTATAATGTCATGGTCATAGATATACTTGGACCTAGTCTCGAGGATTTATTTAACTACTGCAACCGGAAATTCTCATTGAAGACTGTTCTGATGCTTGCTGATCAACTGATTAACAGGATTGAATATGTGCATTCAAAGAGTTTCCTTCATCGAGATATTAAGCCTGACAATTTCCTTATGGGGCTTGGCCGCAGAGCAAATCAGTGTTACATCATAGATTTTGGGCTTGCCAAAAAATATCGGGACCCAGCAACTCATAAGCATATTCCTTACAGGGAAAATAAAAATCTTACAGGGACTGCTCGTTATGCTAGCATCAATACTCATCTTGGAATAGAGCAAAGCAGAAGAGATGATCTTGAATCTTTGGGCTATGTGCTGATGTACTTCTTAAGGGGGAGCCTTCCGTGGCAGGGTTTAAAAGCAGGGACTAAGAAGCAAAAGTATGACAAAATAAGTGAAAAGAAAGTCTCCACTTCAATTGAGGTTTTGTGTAGGTCTTACCCACCGGAGTTTGCCTCATATTTCCATTACTGCCGTGCATTGCGCTTTGATGACAAGCCAGATTATGCATACTTAAAGAGGATGTTCCGTGACTTGTTCATGCGAGAAGGTTTTAAGTCTGATTATGTTTTTGACTGGACTATCTTGAAGTACCAACAAACCCAAATTGCTGCTAGTCCTCGATCAACTCCTATTCTTGGAGCTGGAAAATCTGGTATAGCAGGTCTTACAGAAAGATTTTCAGCTGGACAAGAGGGCCATGCAGGAACCTCTCGAGCAGCCGAAGGGTTTAATCGGAGATCTAGTGGAGTCAATGGTATAGCTTTGAATCGAGCCGGAAGCCAATCTAAGTACAAGAGCTCTGGACAAGATGGCCCTTCAACATCCAAGAGAGTGGGAGTAGAAAATGAGCGTGGAAGTTCCACTATGCGAACTGGAAGCACGTCAAGGAGAGCAGTTCTTTCAAGCAGGCCAACTGTTTCAGCTGAGAGTGGTGAACAATCTCGTTCACTAAGCAATTTTCTTCCTTCAAGTCTTCGTTCTTCAGGTTCTGCAGCTGAGCCCAAGAGATCTTCAATATCGAGAAATCCATCTATGAGGAGTCAACAAGAGAATTGTTTAAGAAATTTCCAGCTACTCTCTGTAGATTCACAACAACATAGGAGGTGA___CTGATTTTTTAATGTGTGAGAGCAGTTTTACAGTGGAGTTGCTGTTCAGATAAGGAATATGCTTTCCTGATCAACTCTGCTGCCTAAAAGTTTCTTTATGTCAGCTTCTTGAAATGTGAGAGCTTTTTAAGAGGTACAAGGGATGTTGAGTTTCTTGGAATTTGCAGACATTAGTTCTGTAACTTGCAGGTAAATAGCAAACCAGTGTGTATGTAACTAGGGAGTTATCTCCTTTGCTGCATCAAGCAGCTATTGATTTGATTCTATTAAATTGTTGAAGGGTATAGTCAATTTGCAGTGGTTGGAATGAAATTATAACATGTGAGCCTAAATGGCCACATTGGATTTGGTTATTTGACCTGTAAGATGCACGTCAAAGTTTTCATTTACCAAGTCTTGCAGAAAAGCTATGATCCGTTATTCCTTGCTAGAAATAATCCTATGTTTTGAAGTTCATGTTGCCTCTTCAAAATGAGAAGGATTTAACGTTTATTCATCTTAAAATAGACATTGTTTTTTGTCAAGGGACCTTTGCTTGGCAGTAGCCATACATAGTTTTTCAAGAATATCAAAGTCATTTTTTCCCAT

Fln Alignment:

sp_v1.1_unigene22999___MEPLVGDKYRLGRKIGSGSFGEIYLGVNIQTNEEVAIKLENAKTKHPQLLYESKLYKILQGGTGVPNIRWSGVEGDYNVMVIDILGPSLEDLFNYCNRKFSLKTVLMLADQLINRIEYVHSKSFLHRDIKPDNFLMGLGRRANQCYIIDFGLAKKYRDPATHKHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKVSTSIEVLCRSYPPEFASYFHYCRALRFDDKPDYAYLKRMFRDLFMREGFKSDYVFDWTILKYQQTQIAASPRSTPILGA---GKSGIAGLTERFSAGQEG--HAGTSRAAEGFNRRSSGVNGIALNRAGSQSKYKSSGQDGPSTSK---RVGVENEXXXXXXXXXXXXXXA------VLSSRPTVSAESGEQSR-SLSNFLPSSLRSSG-------SAAEPKRSSISRNPSMRSQQENCLRNFQLLSVDSQQHR
A9NUC1_______________MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQSNEEVAIKLENVKTKHPQLVYEAKLYRLLQGGTGIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPVSHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATPIEVLCKTYPSEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVLDWTILKYQQTQMANTP--PPSIGAAVGSSSRAPPVADKSSGGQDGRDNPWSSAGADSSRRRNTG----AIVNAGSLSKHKSPAQNESGAGKDVVNVGRPERPDRVHLSGLISQTGSTSRRGVISSSRQAILSDADSSSRPRAADLSPIALHNTGGQRSSPVSSADPKRSGSGRIMPSSRNYEATLKGIEGLSFDMDKRQ

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
29			66	33	0.997452
31		66	33		0.997452
33	33			66	0.997452
35	66		33		0.997452
39			33	66	0.997452
45			66	33	0.997452
48	66			33	0.997452
49		66		33	0.997452
70		60		40	1.0
155	71		28		1.0
175	71	28			1.0
289	33	66			1.0
292		37	12		1.0
529	26		73		1.0
855	83			16	0.994512
1120		11	88		0.923564
1121			88	11	0.923564
1130	90		10		0.90298
1131		90		10	0.90298
1133	13		86		0.999973
1134			86	13	0.999973
1136		20	80		1.0
1140			86	13	0.999973
1141		80	20		1.0
1145	86			13	0.999973
1148			13	86	0.999973
1150		13		86	0.999973
1271		83		16	0.999991
1655	11			88	0.923564
1657		88	11		0.923564
1658	88		11		0.923564
1659	88		11		0.923564
1816		10	90		0.999898
1817	90			10	0.999898
1947	2	4		91	0.919342
1948	2	2	4	91	0.929335
1951			4	95	0.995881
1954	4		95		0.995482
1955	91	6			0.999993
1956	91	6		2	0.999993
1958			3	96	0.993037
1959		1	3	94	0.960243
1962	92			7	1.0
1963		3	96		0.993037
1964	94			5	0.999997
1967		5		92	0.999988
1972			1	94	0.960243
2017	6		93		0.999999
2217		50		50	1.0
2335			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain