SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22960

Length: 1730 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22960

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose 4-epimerase (EC:5.1.3.2); K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	udp-galactose 4-epimerase-like protein	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-glucose 4-epimerase.	EC:5.1.3.2	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	87%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	87%
Blast2go	Metabolic pathways	01100	87%

Source	ECs	Term	Type	e value	Identity
AutoFact	UDP-glucose 4-epimerase.	EC:5.1.3.2	-	0.0	77%

Source	KEGGs	Term	Identity
AutoFact	Galactose metabolism	00052	77%
AutoFact	Amino sugar and nucleotide sugar metabolism	00520	77%
AutoFact	Metabolic pathways	01100	77%

Source	GOs	Term	Type	Identity
Blast2go	response to stress	GO:0006950	Biological Process	87%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	87%
Blast2go	UDP-glucose 4-epimerase activity	GO:0003978	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	87%
Blast2go	UDP-glucose 4-epimerase	IPR005886	-	87%
Blast2go	NAD(P)-binding domain	IPR016040	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LME8

Fln msg: your sequence is longer than subject: 353 - 296

Fln protein: MESQGKNILVTGGAGYVGSHTTLQLLLGGYRVVVIDNLDNSSEEAIRRVAKLAGEYGGNLTFHKIDLLDKEAMEKLFLSTEFDAVIHFAGLKAVGESVAKPLLYYKNNIVGTLNLLEMMISQGCKKLVFSSSATVYGQPKEVPCTEDFPICAMNPYGRTKLFIEEICRDVHRADPDWKIILLRYFNPVGAHPSGFIGEDPRGIPNNLMPFVQQVAVERRPELTVFGNDYQTKDGTGVRDYIHVMDLSDGHTAALDKLFKTKDLGCEVYNLGTGQGTSVLEMVAAFEKASGKKIPLRIADRRPGDVETVYASTEKAERELNWKAKYGVEEMCRDQWNWASKNPWGYEPPETSA*

Protein Length: 354

Fln nts: CGTCGTGACATTGGGTGTAAATGTGTGAATCACCCATGGAATGAGTGGTGCATCACGGGACTTTTGTTGACATTGATATTATTTTCTCACAAAAAAAGTCCGGGGTTATGTCAAGAAGATCTGCTGTTTATTCCTACCATGCAGATCCCCTGAATCAACTATCTAGAATTGTCATTTGGGTATTTATTGAGGCATGTTACTCTTTAGATTTTTGAAGTTTTTGGGCTAATACAGAGCGATAGTGAAC_-_ATGGAGAGCCAAGGAAAGAACATTCTGGTCACTGGAGGAGCAGGTTATGTTGGCAGTCACACTACTTTGCAGTTGCTGCTGGGTGGTTACAGGGTTGTTGTAATTGATAATCTGGATAACTCTTCGGAAGAAGCTATTAGAAGAGTTGCTAAGCTCGCTGGCGAATATGGGGGCAATCTCACCTTCCATAAGATTGATCTTCTGGATAAAGAAGCTATGGAGAAATTGTTCTTATCAACAGAATTTGATGCTGTCATTCATTTTGCTGGGTTGAAAGCTGTCGGAGAGAGTGTAGCAAAGCCACTGCTTTACTACAAAAACAACATAGTTGGCACCTTAAACTTATTGGAAATGATGATTTCCCAAGGTTGCAAGAAGCTAGTATTCTCATCATCTGCTACAGTTTATGGTCAGCCAAAGGAGGTCCCATGCACAGAGGACTTTCCTATATGTGCAATGAACCCATATGGACGTACTAAGCTCTTTATTGAAGAAATATGCCGTGATGTCCACCGGGCAGATCCTGACTGGAAAATAATTTTGCTAAGGTATTTCAATCCTGTTGGAGCTCATCCTAGTGGATTTATTGGTGAAGATCCTCGGGGAATTCCAAACAATCTCATGCCATTTGTTCAACAAGTCGCAGTTGAGAGGAGACCTGAACTTACTGTATTTGGGAATGACTATCAAACAAAAGATGGCACTGGGGTTAGAGACTATATACATGTCATGGACTTGTCAGACGGTCATACTGCTGCCCTAGACAAACTTTTCAAGACCAAAGATCTAGGTTGTGAAGTCTATAATCTTGGGACCGGACAAGGTACATCTGTCCTTGAAATGGTGGCTGCATTTGAAAAGGCCTCAGGGAAGAAAATTCCTTTGAGAATAGCTGATCGCAGGCCTGGAGATGTTGAAACAGTCTATGCATCCACAGAGAAGGCAGAGCGTGAATTAAATTGGAAAGCTAAATATGGAGTAGAGGAGATGTGTCGTGACCAGTGGAATTGGGCTAGCAAAAATCCTTGGGGATATGAACCCCCGGAGACAAGTGCTTAG___TTCGTTCTACATAATGGAAAAGTATGCTGTTACCAGGACGTTGGTTATAATTTAGGGCAATTTAATACAGACCTTTAGTGAGATCCTTCAACCTTCTCATCCTAGACTGCCAGATCTTGAACACCCAGATCAGGGATGCAATTATTATCCCTTGAAAGAGTACATGCTAAGCCATCATTATATCAAAATAGCCAAATCATTATATCAAAATAGCCAAAGAGATTTGGTTTGAAACTACTTGATGCTTGAATGTCATGAACCAAATAACTTGGATTTATTTTAATGCTGGAAATTTTACTGCCCAAAACATTTGTATTTATGTTATCTTCTTTTGGGTAACTATATCTTTTCTTTTGCCACGTGTATTCTGACGATAAAAATGAATATGCCTTTGGAGATATATCGTTTTTGGACTGCCCTTACA

Fln Alignment:

sp_v1.1_unigene22960___VNMESQGKNILVTGGAGYVGSHTTLQLLLGGYRVVVIDNLDNSSEEAIRRVAKLAGEYGGNLTFHKIDLLDKEAMEKLFLSTEFDAVIHFAGLKAVGESVAKPLLYYKNNIVGTLNLLEMMISQGCKKLVFSSSATVYGQPKEVPCTEDFPICAMNPYGRTKLFIEEICRDVHRADPDWKIILLRYFNPVGAHPSGFIGEDPRGIPNNLMPFVQQVAVERRPELTVFGNDYQTKDGTGVRDYIHVMDLSDGHTAALDKLFKTKDLGCEVYNLGTGQGTSVLEMVAAFEKASGKK
B8LME8_______________MKMDGQGKNILVTGGAGYVGSHTSLQLLLGGYRVVVIDNLDNSSEEAIKRVVQLAGEYGDNLTFHKIDLLDKEAMEKLFLSTKFDAVIHFAGLKAVGESVAKPLLYYKNNIVGTINLLETMVSHGCKKLVFSSSATVYGQPKEVPCTEDFPICAMNPYGRTKLFIEEICRDVHRADPDWKIILLRYFNPVGAHPSGFIGEDPRGIPNNLMPFVQQVAVERRPELTVFGNDYQTNDGTGVRDYIHVMDLSDGHIAALNKLFKTEDLGCEVYNLGTGRGTSVLEMVADLKRHLGRK

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
10	66	33			0.997452
12			33	66	0.997452
15	33	33	33		0.997753
16			33	66	0.997452
19	66	33			0.997452
21	66	33			0.997452
23		33		33	0.997753
24	33		66		0.997452
25			33	66	0.997452
100			66	33	0.997452
101		33		66	0.997452
103		66	33		0.997452
141	75		25		0.996473
143		25	75		0.996473
144		75	25		0.996473
145	75			25	0.996473
151		75		25	0.996473
152		75		25	0.996473
153			25	75	0.996473
155	75	25			0.996473
156	75			25	0.996473
159	80		20		0.995493
160	60	20		20	0.99255
162	20			80	0.995493
164		20		80	0.995493
167	80			20	0.995493
170	80		20		0.995493
171		20		80	0.995493
177		20		80	0.995493
181		20	80		0.995493
182	20		80		0.995493
1376		93	6		0.999153
1610	11	88			0.923564
1616	10	90			0.90298
1618	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain