SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22959

Length: 1163 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22959

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein n=11 Tax=rosids RepID=Q9LFT9_ARATH	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	rab6 -family small gtpase	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	secretion by cell	GO:0032940	Biological Process	92%
Blast2go	GTP binding	GO:0005525	Molecular Function	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	membrane fraction	GO:0005624	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTPase superfamily	IPR001806	-	92%
Blast2go	Ras small GTPase, Ras type	IPR003577	-	92%
Blast2go	Small GTPase superfamily, Rho type	IPR003578	-	92%
Blast2go	Small GTPase superfamily, Rab type	IPR003579	-	92%
Blast2go	Small GTP-binding protein domain	IPR005225	-	92%
Blast2go	Ras	IPR013753	-	92%
Blast2go	Small GTPase	IPR020851	-	92%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSV9

Fln msg: W1: There is no M at the beginning,

Fln protein: PWLSLVVSCLLPNISVVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAIRQSFLNTARWIEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGDAKSREFGVIFIETSAKAGFNIKALFRKIAAALPGMEALSSTHKEDMVDVNLKSTVTATETEKKAGGCYC*

Protein Length: 213

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTGTCTTGCCTCTTGCCAAATATAAGCGTTGTGTTCTTGGGAGATCAGTCCGTTGGCAAGACCAGCATTATCACTCGCTTCATGTATGACAAGTTTGACAACACGTATCAGGCTACCATTGGTATCGATTTCTTGTCCAAGACAATGTACCTTGAGGATCGAACTGTTCGTTTGCAGCTGTGGGATACTGCAGGCCAGGAGCGATTCCGTAGTCTTATCCCAAGTTACATTCGAGACTCTTCTGTTGCTGTCGTTGTTTATGATGTTGCAATCCGACAGTCATTCCTGAACACTGCCAGATGGATTGAAGAAGTACGCACAGAGCGAGGTAGTGATGTGATTATTGTGCTTGTTGGAAACAAAACAGATCTGGTTGACAAAAGGCAAGTCTCAATTGAAGAAGGTGATGCAAAGTCTCGGGAATTTGGGGTGATTTTTATTGAAACCAGTGCAAAAGCTGGATTTAACATTAAGGCCTTGTTTCGTAAAATAGCAGCTGCATTACCTGGAATGGAAGCTCTCTCATCAACCCATAAGGAAGACATGGTTGATGTGAATTTAAAATCCACAGTGACTGCAACTGAAACAGAGAAGAAGGCAGGAGGATGCTATTGCTAA___GTATGTAATATTGCTTTGTCTCTTCTTGGTGGCTGAGTTTTTGGCAGAACTTAGTTGGATGTGGAACCATATTCAGATCTCATGGAGCATCATTGGAGTAGGATACATTTCTCATGTTTCCCTAACAGTAATGTATATCGAGAAATGGGAGACTGGGATGCGCAATTTTTATGTAAGAATTATATATTTGGTAGACGATTATTTTGCATGCTTGTCATTAAGCAACTAAGTTAAGGTAAATTTTTTGAAATGGATAATCAAGAATGTAATTCCTTAATGCATCAATGGACTTAATTGGTCTTCGGCATCGCTTGTGGATAACTGATGTTTTCCACTCTTTATTGTACGACATTGGCTCTTTATTGTATGAGAGTGCTTACCGTACTCTTTGATAGGTAGAGATTTTTTTTGAGAAGATTATTGATTACCTGCTTAAAAACTGACTGTCTTCGAAGGGGGTGGAAAGTGGGAGCTTATACCTTCAGATCATTGTCTATCCCTACTAGCAAGCAATAAAAT

Fln Alignment:

sp_v1.1_unigene22959___LPNISVVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXIRQSFLNTARWIEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGDAKSREFGVIFIETSAKAGFNIKALFRKIAAALPGMEALSSTHKEDMVDVNLKSTVTATETEKKAGGCYC
A9NSV9_______________LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVANRQSFLNTARWIEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGDAKAREFGVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQAEQKAGGCSC

SNPs (tot: 81)

Position	A %	C %	G %	T %	Probability
62	20	20		60	0.99255
63		20	80		0.995493
66	20		80		0.995493
67	20			80	0.995493
68		20		80	0.995493
74		20	80		0.995493
75	80			20	0.995493
81		20	80		0.995493
84	20	80			0.995493
233	88	11			0.923564
237	88			11	0.923564
238			11	88	0.923564
239	11			88	0.923564
242			88	11	0.923564
244	88		11		0.923564
247		88	11		0.923564
249		11		88	0.923564
251		11		88	0.923564
252		88		11	0.923564
254	11	88			0.923564
289		18	81		0.999994
290			18	81	0.999994
292		18		81	0.999994
293	81		18		0.999994
297		18		81	0.999994
298		18	81		0.999994
309	81			18	0.999994
390	90	10			0.90298
391	88			11	0.923564
392	88		11		0.923564
393		88		11	0.923564
394	88	11			0.923564
396	88	11			0.923564
397	88			11	0.923564
429		11		88	0.923564
445	78	14		7	0.999974
482	80	13		6	0.999961
487	80		13	6	0.999961
488	80		6	13	0.999961
489	80		13	6	0.999961
491	6	13	80		0.999961
494	5	11	83		0.999887
496	72	11		16	1.0
497		11		88	0.999937
498			22	77	1.0
500	77	11	11		0.999842
503	77	11			0.999842
505		11		88	0.999937
506	88		11		0.999937
507	88	11			0.999937
508			88	11	0.999937
510		89		10	0.999919
512	10			89	0.999919
513		15		84	1.0
514			89	10	0.999919
515		10		89	0.999919
516	10		5	84	0.999846
626	88	8	4		0.999262
627	92			8	0.999718
629	88	8		4	0.999262
631		8	92		0.999718
632			92	8	0.999718
645	89	10			1.0
646			10	89	1.0
650		10		89	1.0
651	89		3	7	0.998606
652	89	3		6	0.998304
654		3	6	89	0.998304
655	86	6		3	0.995852
659	86	6	6		0.995852
661		6		89	0.998304
662	86	6	3	3	0.995852
818		9		90	0.90298
821			9	90	0.90298
822			9	90	0.90298
823	90	9			0.90298
829		9	90		0.90298
831	90	10			0.991528
833		10		90	0.991528
1135	40	60			1.0
1143			40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain