SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22946

Length: 429 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene22946
CGTCGTGACCTTGGCTGTCACTCATTTCTGTATAGATGTGTTTGATGCTGTTTTGAGTCGGCTTGACTATGCACTGCCATATGATCTCATTCCTTATGCTGAAGAGGGCCAAAACCGAACACAGTCCTATAACGATCTTGTCCATCAAGTCTACCTTAAGGAATTTGATGCAGTAGTGGGGGACACCACAATCTTAGCAAATAGGAGTAGGTTTGTTGATTTCACACAACCGTATACAGATTCGGGTTTTGTGATGGTTGTACAAACCAAAACAAAGGCAGCGAGTCACACTTGGGCATTTATGCTGCCTTTCAGTCGAGGCCTGTGGTGCACGACAGGCGTATTCTTTGTATGCACAGGAATTGTGATATGGCTGCTTGAGCATAGAATAAATTCCGAGTTTAGAGGAAAGCCCAAGGACCAAGTGGT

Ace file of the UniGene sp_v1.1_unigene22946

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutamate receptor 2 plant, putative n=1 Tax=Ricinus communis RepID=B9RNQ3_RICCO	-	-	1.0e-39	55%
FL-Next	sp=Glutamate receptor 2.2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Blast2go	glutamate-gated kainate-type ion channel receptor subunit 5	-	-	1.82472e-39	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Extracellular solute-binding protein, family 3	IPR001638	-	1.82472e-39	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SHV1

Fln msg: Distance to subject end: 302 aas, your sequence is shorter than subject: 142 - 920

Fln protein: VVTLAVTHFCIDVFDAVLSRLDYALPYDLIPYAEEGQNRTQSYNDLVHQVYLKEFDAVVGDTTILANRSRFVDFTQPYTDSGFVMVVQTKTKAASHTWAFMLPFSRGLWCTTGVFFVCTGIVIWLLEHRINSEFRGKPKDQV

Protein Length: 143

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTGTATAGATGTGTTTGATGCTGTTTTGAGTCGGCTTGACTATGCACTGCCATATGATCTCATTCCTTATGCTGAAGAGGGCCAAAACCGAACACAGTCCTATAACGATCTTGTCCATCAAGTCTACCTTAAGGAATTTGATGCAGTAGTGGGGGACACCACAATCTTAGCAAATAGGAGTAGGTTTGTTGATTTCACACAACCGTATACAGATTCGGGTTTTGTGATGGTTGTACAAACCAAAACAAAGGCAGCGAGTCACACTTGGGCATTTATGCTGCCTTTCAGTCGAGGCCTGTGGTGCACGACAGGCGTATTCTTTGTATGCACAGGAATTGTGATATGGCTGCTTGAGCATAGAATAAATTCCGAGTTTAGAGGAAAGCCCAAGGACCAAGTGGT

Fln Alignment:

sp_v1.1_unigene22946___VTHFCIDVFDAVLSRLDYALPYDLIPYAEEGQNRTQSYNDLVHQVYLKEFDAVVGDTTILANRSRFVDFTQPYTDSGFVMVVQTKTKAASHTWAFMLPFSRGLWCTTGVFFVCTGIVIWLLEHRINSEFRG
Q9SHV1_______________VKGFCIDFFEAVIQAMPYDVSYEFFPFEKPNGEPAGNHNDLVHQVYLGQFDAVVGDTTILANRSSFVDFTLPFMKSGVGLIVPLKDEVKRDKFSFLKPLSIELWLTTLVFFFLVGISVWTLEHRVNSDFRG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain