SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22935

Length: 1106 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22935

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Picea sitchensis RepID=A9NTD0_PICSI	-	-	99%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	ubiquitin-conjugating enzyme e2 16	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	protein import into peroxisome matrix	GO:0016558	Biological Process	90%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	90%
Blast2go	ligase activity	GO:0016874	Molecular Function	90%
Blast2go	protein binding	GO:0005515	Molecular Function	90%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin-conjugating enzyme, E2	IPR000608	-	90%
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	90%
Blast2go	Ubiquitin-conjugating enzyme, active site	IPR023313	-	90%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
88	66		33		0.997452
89	33			66	0.997452
90		33		66	0.997452
91	66	33			0.997452
95			33	66	0.997452
99		66	33		0.997452
100			66	33	0.997452
101	66	33			0.997452
102	25			75	0.996473
105		25		75	0.996473
106	25			75	0.996473
345			60	40	1.0
618	90	9			0.999919
621	90			9	0.999919
912	87		12		0.992554
968		88	11		0.923564
969		88	11		0.923564
1039	50		50		1.0
1045		20	20	60	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain