SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22918

Length: 2840 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22918
ATGGGAATCACCGCAAGACAAATACACGTATTGAGGACGCGTAATTTACAGATTCAGTTGAAAGTGATGGCGTGACTTGCCCCGGTAACCGTAGCAATACAGATACAAGACACTGATGTTCAATATTAGGCCCTGTTAGATCTGTTTAGAAATTCTATCGACCTTTCTGCCAGAAGCAGCGGGCTTCCTCTCTCTTCTCAGGGAACTGCGGAGTCGGGGAGAGGCCGACTGATTTCTCTTGCTTTCGGGCTGATTGAAATCTGTCCCTCTTTAATGGAGTGCCGGCCGTGGGCATACACGATCTCGATCTGAAGAGTGATTGGGTTATTTGATTTATTTGATTCAGCTCAAGATTTTGGCGAGGAGGCGATCTTGGGATACCTAGTGGCACTGCCATGGATAATTTAATAACTCTGGTAAACAAGATACAGAGGGCCTGCACCGCGCTCGGTGACCATGGAGAAGAGAACGCTTTGCCGACTCTCTGGGATGCCCTTCCCTCCATAGCCGTCGTGGGAGGACAGAGCTCCGGGAAATCCTCTGTGCTGGAGAGCATCGTTGGAAGGGATTTTTTACCGCGTGGATCAGGTATTGTTACTAGACGGCCGCTTGTCCTTCAACTTCACAAGACTGATGAAGGCAGCAGGGACTACGCCGAGTTCCTTCACCAACCCAGAAAGAAATACACCGACTTTGCACTGGTAAGGAAGGAAATTGCGGATGAGACTGATCGAATTACAGGGCGTTCCAAGCAAGTCTCAAGTGTCCCAATTCACCTTAGTATTTTTTCACCCAATGTTGTAAATTTGACTCTAATTGATCTCCCTGGGTTGACAAAAGTGGCTATTGACGGTCAACCTGAAAGTGTTGTTGCTGATATTGAGAACATGGTTCGCTCTTTCATTGAGAAGCCAAATTCATTAATTTTAGCTATTTCTCCTGCAAATCAAGATCTTGCCACCTCTGATGCCATCAAGATATCTCGAGAGGTAGATCCTAAAGGAGAGAGAACTTTTGGAGTCTTGACAAAGGTAGATCTGATGGATAAGGGAACCAATGCTGTGGATATTTTGGAAGGAAAAGCATATCGTTTGCAGTTTCCTTGGGTTGGTGTTGTGAATCGCTCTCAAGCAGATATCAACAAAAGTGTTGACATGGTTGTTGCAAGACGAAGAGAGCGGGAATATTTTTCAAATAATCCAGACTATAAACATATAGCACACAGAATGGGATCAGAACATCTTGCAAAGATGCTTTCAAAGCATCTTGAAACTGTAATTAAGTCACGCATCCCAAGCCTTCAGTCACTTATCAACAAAACTATTGCTGATATTGAAACAGAGTTGAGTCGACTTGGAAAGCCGATTGCTTCTGATGCTGGAGGACAATTGTATGCCATTTTGGAGATTTGTCGGGCTTTCGACCAGATATTCAAAGAGCACCTTGACGGAGTGCGTTCAGGTGGTGATAGAATTTACAATGTCTTTGATAATCAACTTCCTGCAGCTCTTAAAAGGCTATCGTTTGAGAAGCACCTTTCAATGGAAAATGTGAGGAAGCGCATTACAGAGGCGGATGGCTATCAACCTCATTTGATAGCCCCTGAGCAAGGATACAGACATCTTATTGAAACTTCCTTGAGCACTATCAAAGGTCCTGCTGAGGCCACTGTTGATGCGATACATTATGTACTCAAGGATCTTGCTCATAAAGCACTGACTGAGACAGCGGAACTCAAGCAATACCCATCTCTCCGCATTGAGGTTGGAAATGCAGCCGTTGATGCCCTTGAAAAATTACGAGATGAGAGCCGGAAATCAGCAGTGAAACTTGTGGAGATGGAATGCAGCTACTTGACTGTTGATTTTTTCCGTAAACTCCCTCAAGATCTAGAGAAGGGTGGAAATCCATCACAATCAGTATTTGATCGATATAATGAGAGTTACCTTCACAGAATTGGAAACAATGTATTGGCATATGTGAACATGGTATGTGGCTATCTGAGGAATGCAATTCCAAAATCTGTCGTTCATTGTCAAGTACGGGAGGCCAAGCGTTCGTTACTTGACCATTTCTTTACCGAACTTGGTAAAAAGGAGGGAAGACAGTTATCAACATTGTTGGATGAAGACCCAGCAGTGATGGAACGGAGAACAGGCTTGGCAAAGAGGCTAGAACTATACAAGAGTGCACAAGCAGAAATAGATGCTGTTGCTTTCTAATTTTGGATATGGTTATTCATTGGACGTGTAAAAACCCATTTTGATCCATCGACCAAGGACCATTGCACAATTACAGAACATGACATTGGGTTGTATGAGATGATAATTTGTATATCTGTTTGAATACTATTATTTGCTTTTGTAGCTTGGGATGTTTTGAAATTGGTCTGTGCTAGGGGTGCATTCAATGTTTGTATTCTAATTTTTAATATCTATTACGAATATTTGACAACTGCCATAAGTTATTTAGCTGAGAGTGATCACTTCTTGAATTCAAGATTACATCACATATCTCTGCTTGTCTTGAAGGCTTCAACTACAGTATTTGAAGAGCAGATAGCATGTAAATGCATTTAGAACAGAATATATTGAGTGAAGTGTTTCTTCTGTAACCTAAATTGGCAAAACTCTTTAGTGGCACCCATGCTTGCAGTATGAGAGTTAGCAGTCATAATCTATAAAAATAGTCCTAAAGGACATGCCTAGAAATCCACAAAATTCATGATTCCACCAAGAGTAGCGAGGTGCTATGCAGACCAGTATGACATTGATGTTGTCACATATATATGTATTATGTGTGTGACAACATCTAAATAATTGAACCCTGGATTGACACTG

Ace file of the UniGene sp_v1.1_unigene22918

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	dynamin, putative	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	at5g42080 mjc20_19	-	-	93%

Source	ECs	Term	Type	Identity
Blast2go	Heterotrimeric G-protein GTPase.	EC:3.6.5.1	-	93%
Blast2go	Small monomeric GTPase.	EC:3.6.5.2	-	93%
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	93%
Blast2go	Signal-recognition-particle GTPase.	EC:3.6.5.4	-	93%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	93%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	93%
Blast2go	trichome branching	GO:0010091	Biological Process	93%
Blast2go	synaptic vesicle endocytosis	GO:0048488	Biological Process	93%
Blast2go	cell plate formation involved in plant-type cell wall biogenesis	GO:0009920	Biological Process	93%
Blast2go	clathrin binding	GO:0030276	Molecular Function	93%
Blast2go	GTPase activity	GO:0003924	Molecular Function	93%
Blast2go	cell plate	GO:0009504	Cellular Component	93%
Blast2go	microtubule	GO:0005874	Cellular Component	93%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	93%
Blast2go	plasma membrane	GO:0005886	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Blast2go	Dynamin central domain	IPR000375	-	93%
Blast2go	Dynamin, GTPase domain	IPR001401	-	93%
Blast2go	Dynamin GTPase effector	IPR003130	-	93%
Blast2go	Dynamin, GTPase region, conserved site	IPR019762	-	93%
Blast2go	GTPase effector domain, GED	IPR020850	-	93%
Blast2go	Dynamin	IPR022812	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLP8

Fln msg:

Fln protein: MDNLITLVNKIQRACTALGDHGEENALPTLWDALPSIAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDEGSRDYAEFLHQPRKKYTDFALVRKEIADETDRITGRSKQVSSVPIHLSIFSPNVVNLTLIDLPGLTKVAIDGQPESVVADIENMVRSFIEKPNSLILAISPANQDLATSDAIKISREVDPKGERTFGVLTKVDLMDKGTNAVDILEGKAYRLQFPWVGVVNRSQADINKSVDMVVARRREREYFSNNPDYKHIAHRMGSEHLAKMLSKHLETVIKSRIPSLQSLINKTIADIETELSRLGKPIASDAGGQLYAILEICRAFDQIFKEHLDGVRSGGDRIYNVFDNQLPAALKRLSFEKHLSMENVRKRITEADGYQPHLIAPEQGYRHLIETSLSTIKGPAEATVDAIHYVLKDLAHKALTETAELKQYPSLRIEVGNAAVDALEKLRDESRKSAVKLVEMECSYLTVDFFRKLPQDLEKGGNPSQSVFDRYNESYLHRIGNNVLAYVNMVCGYLRNAIPKSVVHCQVREAKRSLLDHFFTELGKKEGRQLSTLLDEDPAVMERRTGLAKRLELYKSAQAEIDAVAF*

Protein Length: 610

Fln nts: ATGGGAATCACCGCAAGACAAATACACGTATTGAGGACGCGTAATTTACAGATTCAGTTGAAAGTGATGGCGTGACTTGCCCCGGTAACCGTAGCAATACAGATACAAGACACTGATGTTCAATATTAGGCCCTGTTAGATCTGTTTAGAAATTCTATCGACCTTTCTGCCAGAAGCAGCGGGCTTCCTCTCTCTTCTCAGGGAACTGCGGAGTCGGGGAGAGGCCGACTGATTTCTCTTGCTTTCGGGCTGATTGAAATCTGTCCCTCTTTAATGGAGTGCCGGCCGTGGGCATACACGATCTCGATCTGAAGAGTGATTGGGTTATTTGATTTATTTGATTCAGCTCAAGATTTTGGCGAGGAGGCGATCTTGGGATACCTAGTGGCACTGCC_-_ATGGATAATTTAATAACTCTGGTAAACAAGATACAGAGGGCCTGCACCGCGCTCGGTGACCATGGAGAAGAGAACGCTTTGCCGACTCTCTGGGATGCCCTTCCCTCCATAGCCGTCGTGGGAGGACAGAGCTCCGGGAAATCCTCTGTGCTGGAGAGCATCGTTGGAAGGGATTTTTTACCGCGTGGATCAGGTATTGTTACTAGACGGCCGCTTGTCCTTCAACTTCACAAGACTGATGAAGGCAGCAGGGACTACGCCGAGTTCCTTCACCAACCCAGAAAGAAATACACCGACTTTGCACTGGTAAGGAAGGAAATTGCGGATGAGACTGATCGAATTACAGGGCGTTCCAAGCAAGTCTCAAGTGTCCCAATTCACCTTAGTATTTTTTCACCCAATGTTGTAAATTTGACTCTAATTGATCTCCCTGGGTTGACAAAAGTGGCTATTGACGGTCAACCTGAAAGTGTTGTTGCTGATATTGAGAACATGGTTCGCTCTTTCATTGAGAAGCCAAATTCATTAATTTTAGCTATTTCTCCTGCAAATCAAGATCTTGCCACCTCTGATGCCATCAAGATATCTCGAGAGGTAGATCCTAAAGGAGAGAGAACTTTTGGAGTCTTGACAAAGGTAGATCTGATGGATAAGGGAACCAATGCTGTGGATATTTTGGAAGGAAAAGCATATCGTTTGCAGTTTCCTTGGGTTGGTGTTGTGAATCGCTCTCAAGCAGATATCAACAAAAGTGTTGACATGGTTGTTGCAAGACGAAGAGAGCGGGAATATTTTTCAAATAATCCAGACTATAAACATATAGCACACAGAATGGGATCAGAACATCTTGCAAAGATGCTTTCAAAGCATCTTGAAACTGTAATTAAGTCACGCATCCCAAGCCTTCAGTCACTTATCAACAAAACTATTGCTGATATTGAAACAGAGTTGAGTCGACTTGGAAAGCCGATTGCTTCTGATGCTGGAGGACAATTGTATGCCATTTTGGAGATTTGTCGGGCTTTCGACCAGATATTCAAAGAGCACCTTGACGGAGTGCGTTCAGGTGGTGATAGAATTTACAATGTCTTTGATAATCAACTTCCTGCAGCTCTTAAAAGGCTATCGTTTGAGAAGCACCTTTCAATGGAAAATGTGAGGAAGCGCATTACAGAGGCGGATGGCTATCAACCTCATTTGATAGCCCCTGAGCAAGGATACAGACATCTTATTGAAACTTCCTTGAGCACTATCAAAGGTCCTGCTGAGGCCACTGTTGATGCGATACATTATGTACTCAAGGATCTTGCTCATAAAGCACTGACTGAGACAGCGGAACTCAAGCAATACCCATCTCTCCGCATTGAGGTTGGAAATGCAGCCGTTGATGCCCTTGAAAAATTACGAGATGAGAGCCGGAAATCAGCAGTGAAACTTGTGGAGATGGAATGCAGCTACTTGACTGTTGATTTTTTCCGTAAACTCCCTCAAGATCTAGAGAAGGGTGGAAATCCATCACAATCAGTATTTGATCGATATAATGAGAGTTACCTTCACAGAATTGGAAACAATGTATTGGCATATGTGAACATGGTATGTGGCTATCTGAGGAATGCAATTCCAAAATCTGTCGTTCATTGTCAAGTACGGGAGGCCAAGCGTTCGTTACTTGACCATTTCTTTACCGAACTTGGTAAAAAGGAGGGAAGACAGTTATCAACATTGTTGGATGAAGACCCAGCAGTGATGGAACGGAGAACAGGCTTGGCAAAGAGGCTAGAACTATACAAGAGTGCACAAGCAGAAATAGATGCTGTTGCTTTCTAA___TTTTGGATATGGTTATTCATTGGACGTGTAAAAACCCATTTTGATCCATCGACCAAGGACCATTGCACAATTACAGAACATGACATTGGGTTGTATGAGATGATAATTTGTATATCTGTTTGAATACTATTATTTGCTTTTGTAGCTTGGGATGTTTTGAAATTGGTCTGTGCTAGGGGTGCATTCAATGTTTGTATTCTAATTTTTAATATCTATTACGAATATTTGACAACTGCCATAAGTTATTTAGCTGAGAGTGATCACTTCTTGAATTCAAGATTACATCACATATCTCTGCTTGTCTTGAAGGCTTCAACTACAGTATTTGAAGAGCAGATAGCATGTAAATGCATTTAGAACAGAATATATTGAGTGAAGTGTTTCTTCTGTAACCTAAATTGGCAAAACTCTTTAGTGGCACCCATGCTTGCAGTATGAGAGTTAGCAGTCATAATCTATAAAAATAGTCCTAAAGGACATGCCTAGAAATCCACAAAATTCATGATTCCACCAAGAGTAGCGAGGTGCTATGCAGACCAGTATGACATTGATGTTGTCACATATATATGTATTATGTGTGTGACAACATCTAAATAATTGAACCCTGGATTGACACTG

Fln Alignment:

sp_v1.1_unigene22918___MDNLITLVNKIQRACTALGDHGEENALPTLWDALPSIAXXXXXXXXXXXXLESIVGRDFLPRGSGIVTRRPLVLQLHKTDEGSRDYAEFLHQPRKKYTDFALVRKEIADETDRITGRSKQVSSVPIHLSIFSPNVVNLTLIDLPGLTKVAIDGQPESVVADIENMVRSFIEKPNSLILAISPANQDLATSDAIKISREVDPKGERTFGVLTKVDLMDKGTNAVDILEGKAYRLQFPWVGVVNRSQADINKSVDMVVARRREREYFSNNPDYKHIAHRMGSEHLAKMLSKHLETVIKSRIPSLQSLINKTIADIETELSRLGKPIASDAGGQLYAILEICRAFDQIFKEHLDGVRSGGDRIYNVFDNQLPAALKRLSFEKHLSMENVRKRITEADGYQPHLIAPEQGYRHLIETSLSTIKGPAEATVDAIHYVLKDLAHKALTETAELKQYPSLRIEVGNAAVDALEKLRDESRKSAVKLVEMECSYLTVDFFRKLPQDLEKGGNPSQSVFDRYNESYLHRIGNNVLAYVNMVCGYLRNAIPKSVVHCQVREAKRSLLDHFFTELGKKEGRQLSTLLDEDPAVMERRTGLAKRLELYKSAQAEIDAVAF
B8LLP8_______________MDNLITLVNKIQRACTALGDHGEENALPTLWDALPSIAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDEGSRDYAEFLHQPRKKFTDFAQVRKEIADETDRITGRSKQVSSVPIHLSIYSPNVVNLTLIDLPGLTKVAIEGQAESVVADIENMVRSYIEKPNSIILAISPANQDLATSDAIKISREVDPKGERTFGVLTKVDLMDKGTNAVDILEGKAYRLQFPWVGVVNRSQADINKSVDMVVARRREREYFSSNPDYKHLAHRMGSEHLAKILSKHLETVIKSRIPSLQSLINKTLAEIESELSRLGKPIAADAGGQLYAILEICRAFDQIFKEHLDGVRPGGDRIYNVFDNQLPAALKRLSFEKHLSMENVRKRITEADGYQPHLIAPEQGYRHLIETSLSTIRGPAEATVDAIHYVLKDLAHKAVSETAELKQYPSLRIEVGNAAIDALEKLRDESRKSALKLVDMECSYLTVDFFRKLPQDLEKGGNPSQSVFDRYNETYLHRIGNNVLAYVNMVCGYLRNAIPKSVVHCQVREAKRSLLDHFFTELGKKEGKQLSTMLDEDPAVMERRAGLAKRLELYKSAQAEIDAVAF

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
84	33	33	33		0.997753
85		66		33	0.997452
86		33	33	33	0.997753
87		33	66		0.997452
88	33			66	0.997452
89	66		33		0.997452
93			66	33	0.997452
95	66		33		0.997452
98	66			33	0.997452
99	66		33		0.997452
105	66	33			0.997452
117		16	83		0.994512
118	83		16		0.994512
122	16			83	0.994512
124	83	16			0.994512
125	83			16	0.994512
127	83		16		0.994512
128			16	83	0.994512
129		16		83	0.994512
130	83			16	0.994512
132			83	16	0.994512
134	16	83			0.994512
139		16		83	0.994512
140	16			83	0.994512
225	80		20		0.995493
2218		5		95	0.997749
2437		4		95	0.994598
2502	4	95			0.995055
2596		6		93	0.999453
2614	12	81			0.999943
2615		18		81	1.0
2616	7		69		1.0
2620	12	87			0.992554
2621		87	12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain