SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22903

Length: 1724 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22903

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	syntaxin, putative; K08486 syntaxin 1B/2/3	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	syntaxin 132	-	-	85%

Source	InterPros	Term	Type	Identity
Blast2go	Target SNARE coiled-coil domain	IPR000727	-	85%
Blast2go	Syntaxin, N-terminal	IPR006011	-	85%
Blast2go	Syntaxin/epimorphin, conserved site	IPR006012	-	85%
Blast2go	t-SNARE	IPR010989	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB89

Fln msg:

Fln protein: MNDLLADSVELPRMGASRDALDLEAGTSVTANTSDLGMEDFFKQVKEIEKLMEKLNKQLQKLQDAHEESKSVTKASAMKAIKQRMEKDVDEVGKIARNIKQKLESLDADNVANRKKPGCEKGTGVDRSRMTMTTTLKKKLKDRMSDFQTLRQMIQEEYREVVERRVFTVTGTKADEETIDRLIETGDSEQIFQKAIQEQGRGRIMDTLAEIQERHDAVRDIEKKLLDLHQIFLDMAVLVESQGDMLDNIETQVSNAVDHVQSGTVALQKAKTLQRNSRKWMCIAIIILLIIVAVIVVGVVKPWQSKQS*

Protein Length: 310

Fln nts: ATGGGGGCACGCAGGCATGGGGGATGTGATGTGGGACACCCCACCTCACATCCCCTGCTGGCCAGGTCATTGCCACTGGCAAAATGCTGGAGTTGCCAAAATACCCACTTTCTTAATCTGACCCAAACCCTACTCACCTCAAACCACCGCCACTAGGACCCAAATCCCATTCCTGTTCTAAGTCCCATTTACAGGTAGATCCGTGTATGGGTTTTGCTTCATATGCAGAGTTGGTTTTGAATTTCATCTTCCTTCGTTTTGCTCAAGTTGCCTTAGCCAGGGCACTGTAAGCTGTCTGAACAATTCACAGGTTTTTGGTTCATTACATTACTTGCAGTGAGTTCTTATCAGTGAGCGTCCAAG_-_ATGAACGATCTATTGGCGGATTCTGTTGAGCTCCCCAGAATGGGGGCTTCCAGAGATGCATTAGATCTTGAGGCAGGGACTTCGGTCACTGCCAATACGTCAGATCTTGGAATGGAAGATTTCTTTAAACAGGTGAAAGAAATTGAAAAGTTGATGGAAAAGCTGAATAAACAATTGCAGAAGCTTCAGGATGCACACGAGGAATCCAAGTCTGTTACAAAGGCATCTGCTATGAAAGCAATTAAACAGCGCATGGAGAAAGATGTGGATGAAGTGGGAAAAATTGCTCGCAATATCAAGCAAAAACTTGAATCTCTTGATGCAGATAATGTAGCCAACAGAAAGAAACCTGGATGTGAGAAAGGCACCGGTGTTGATCGATCTCGAATGACAATGACTACCACCTTGAAAAAAAAGTTAAAGGACCGCATGTCTGATTTTCAGACACTCAGGCAGATGATTCAGGAGGAATATCGAGAAGTAGTTGAACGAAGAGTTTTTACAGTGACTGGGACAAAGGCCGATGAAGAGACAATTGATCGCTTGATAGAGACCGGGGATAGTGAGCAGATCTTCCAAAAGGCTATTCAGGAGCAAGGTCGAGGACGGATCATGGACACCTTAGCAGAGATTCAGGAGCGACATGATGCAGTCAGAGACATTGAGAAAAAGCTTCTTGATCTGCATCAGATTTTCTTGGATATGGCTGTGCTGGTTGAGTCACAAGGAGACATGCTTGATAACATTGAAACTCAGGTTTCCAATGCTGTGGACCATGTGCAATCAGGGACTGTTGCTCTTCAAAAGGCCAAGACATTACAGCGGAATTCAAGGAAGTGGATGTGCATTGCCATCATAATTCTTTTAATAATTGTAGCTGTAATTGTTGTTGGAGTTGTTAAGCCATGGCAAAGCAAACAATCTTAA___TAAGTTAAGTTTGGAGAGCTAGTTCGGTTTTCTTGAAAATTTATGTTGTTATTTCTAATTCATGTCTTCTGTCATGGACAACTTCATCCAAACTTGTAAGCAATCTCTTCATCCTATTTGAAAAGTGCTTAGAATATCCTAGTTTAGATTTTGCCAGTCATGCCAGAAACCATTTATCCTTGTGGGTTGTTTCATTCAGTTGTTATTGTAGCTTAGCTGATGAAGTTACCTTTCACAAGGAACTTCAAGAAAACTATGTAATGTACTCTTTTGTTGCATTTCCCACATTATATCTATTTTCAAGAAGACATTCGTTCTGAAATCTACAGTGGAATGCTAATAAAGTGCAGCAATCAAGTATGCGGTCACTATTGTATTTTTCTGGTCAAACAATTGAATTGTAACAATAAAATGCCACTTAAATGAACATTTCT

Fln Alignment:

sp_v1.1_unigene22903___MNDLLADSVELPRMGASRDALDLEAGTSVTANTSDLGMEDFFKQVKEIEKLMEKLNKQLQKLQDAHEESKSVTKASAMKAIKQRMEKDVDEVGKIARNIKQKLESLDADNVANRKKPGCEKGTGVDRSRXXXXXXXXXXXXDRMSDFQTLRQMIQXXXXXXXXXXXFTVTGTKADEETIDRLIETGDSEQIFQKAIQEQGRGRIMDTLAEIQERHDAVRDIEKKLLDLHQIFLDMAVLVESQGDMLDNIETQVSNAVDHVQSGTVALQKAKTLQRNSRKWMCXXXXXXXXXXXXXXXXXXKPWQSKQS
D5AB89_______________MNDLLTDSFELPRMGASKDALDLEAGTSVTANPSDLGMEDFFKQVKDIEKLMEKLNKQLQKLQDAHEESKSVTKASAMKAIKQRMEKDVDEVGRIARNIKQKLESLDADNVANRKKPGCEKGTSVDRSRMTMTTTLKKKLKDRMSDFQTLRQMIQEEYREVVERRVFTVTGTKADEETIDRLIETGDSEQIFQKAIQEQGRGRIMDTLAEIQERHDAVKDIEKKLLDLHQIFLDMAVLVESQGDMLDNIETQVSNAVDHVQSGTVALQKAKTLQRNSRKWMCIAIIILLIIVAVIVVGVIKPWQSKQA

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
18			33	66	0.997452
20	33		66		0.997452
21	33		66		0.997452
24			33	66	1.0
53		33		66	1.0
90		25		75	0.996473
92			75	25	0.996473
93	75	25			0.996473
96			25	75	0.996473
97	25		75		0.996473
101	75			25	0.996473
102	75		25		0.996473
103	75		25		0.996473
104	75	25			0.996473
106	75			25	0.996473
108	25	75			0.996473
110	75			25	0.996473
112	25			75	0.996473
131	10	90			0.90298
135	90			10	0.90298
136		90	10		0.90298
137			10	90	0.90298
141		81	18		0.999994
154		63		36	1.0
249	88		11		0.999952
339	65		34		1.0
408			81	6	0.999943
679	16			83	1.0
747	30	70			1.0
759	87		12		0.992554
762		12	87		0.992554
882	40		60		1.0
987	16	83			0.994512
989			16	83	0.994512
990	83		16		0.994512
1097	90		10		0.90298
1098		90	10		0.90298
1110		90		10	0.90298
1296	16			83	0.994512
1326			3	96	0.993037
1329	94		1		0.960243
1343	3			96	0.99245
1667		14		85	0.993533
1669		14		85	0.993533
1672	16			83	0.994512
1673			16	83	0.994512
1675			16	83	0.994512
1676	16	83			0.994512
1677		16		83	0.994512
1681		16		83	0.994512
1684	80	20			0.995493
1685	80			20	0.995493
1686		80	20		0.995493
1690		25		75	0.996473
1693	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain