SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22901

Length: 1291 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22901

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme E2 variant 1C n=3 Tax=Eukaryota RepID=D3PJZ2_9MAXI	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	ubiquitin-conjugating enzyme family protein	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	postreplication repair	GO:0006301	Biological Process	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	UBC13-MMS2 complex	GO:0031372	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	91%
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1T5

Fln msg:

Fln protein: MANHATVVVPRNFRLLEELERGEKGFGDGTVSYGMDDGDDIYMRSWTGTIIGPHNSVHDGRIYQLKLFCDRDYPNRPPTVRFLSRINMTCVSKESGVVEPRHFPMLANWRTEYTMEDILMELKREMAAPYNRRLSQPPEGSTF*

Protein Length: 145

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTTTCTAATGAATCTAGGCCAAATATCACTTGCTTAAAAGGCCCAGACAACCAAGAGTCATTCTTTATCGCTTAATCTTCCATGTATATATTTCGGAGAACGACGCTCCACTTACTGTAGTTGGCAATTGAGGTGAAGGAATCCAGAGCAGAGGAGAGCGGGAGAAGGAGCGCAGAGTAGAAGGTCTTCACCACTGCCAACGTTTTAGATCGGATCGGCGCCG_-_ATGGCCAACCACGCAACTGTTGTTGTTCCAAGAAATTTTCGATTGCTGGAAGAGCTAGAAAGAGGAGAGAAAGGCTTTGGAGATGGGACTGTCAGCTATGGAATGGATGATGGAGATGATATCTATATGCGCTCTTGGACAGGGACAATCATTGGGCCACATAATTCAGTTCATGATGGCCGTATATACCAGCTAAAATTATTCTGTGACAGGGACTATCCAAACAGACCCCCAACTGTCAGATTCCTTTCTCGAATCAACATGACATGCGTGAGTAAGGAAAGTGGAGTGGTAGAACCAAGGCATTTTCCAATGCTAGCAAATTGGCGGACTGAGTACACAATGGAGGATATATTAATGGAGCTAAAGCGTGAGATGGCAGCACCGTATAACAGAAGACTGTCACAGCCCCCCGAAGGAAGTACTTTTTAG___GAGAGGCTTGAATAAAATGAAATATTAATTTTATTCTCACGTCTCAAGGACTTAGATATGTGCAGTATTCCTGCCTTCTGATTCATGGATACTCGTAATGTGAAAATCACTCTCTGGAATTGTGACTTGTACTTGTTTAGTGTTTATCTTGGATTGGTATGCTGATTTTCCAGAGGCCTTTAGCTAGGGATCATGTTGGGTGTTGAATTTCATTATCTAGATCAATATGGTTATTGATCAAAGAAGCTTATTTTTCCAGATGGAACCATCTACTTTTTTTTTTTAAATTGCTTTGGTTTCTCCTAAAGACGGACTTGATTTGAGGCTTTTTTAATTATAACTTTCTCAAGTGAACTGACACTGACAAAATTCGGTGTTTGAATGTAAAAGGCAGATAAACACTGCTCAAAATCTAATGCTAGAGTGTTTTTCAAATTGAACATCTATAGGCATGCACATTTGTAGGCAAATGTGTTATTTTATTGGACATAATCCTAGATCTGTAACTGAACGGATGTGCTGTGTCTTTAGTAACTTGGTTTAACACTAAATCGTGTTATTTTTTTATATCCAGCTTGGTATATAATATTATTCAAATGTCTTAATTGC

Fln Alignment:

sp_v1.1_unigene22901___MANHATVVVPRNFRXXXXXXRGEKGFGDGTVSYGMDDGDDIYMRSWTGTIIGPHNSVHDGRIYQLKLFCDRDYPNRPPTVRFLSRINMTCVSKESGVVEPRHFPMLANWRTEYTMEDILMELKREMAAPYNRRLSQPPEGSTF
A9P1T5_______________MANQSTVVVPRNFRLLEELERGEKGFGDGTVSYGMDDGDDIYMRSWTGTIIGPHNSVHDGRIYQLKLFCDKDYPNKPPTVRFLSRINLTCVSKESGVVEPKHFPMLASWRTEYTMEDILMELKREMAAPYNRRLSQPPEGSTF

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
76	83			16	0.994512
77	66		16	16	0.988813
78		66	16	16	0.988813
79		83	16		0.994512
80	16		16		0.988813
81	83	16			0.994512
82	83			16	0.994512
83		16	83		0.994512
90			14	85	0.993533
91		85	14		0.993533
92			14	85	0.993533
94			14	85	0.993533
99		28	71		1.0
110		71	28		1.0
132	71		28		1.0
140	14	85			0.993533
145			14	85	0.993533
270		10		90	0.90298
289		14		85	0.993533
577		4		95	0.995482
579			95	4	0.995482
587	95			4	0.995482
879	3		96		0.991164
881			5	94	0.999997
1086		36		63	1.0
1089		36		63	1.0
1116		87	12		0.992554
1117	87			12	0.992554
1129		20		80	0.995493
1134		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain