SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22897

Length: 1658 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22897

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase-like protein n=4 Tax=Malpighiales RepID=B9IPJ4_POPTR	-	-	88%
FL-Next	tr=Cellulose synthase catalytic subunit; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	49%
Blast2go	cellulose synthase-like d3- glycosyltransferase family 2 protein	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	93%
Blast2go	response to cold	GO:0009409	Biological Process	93%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	93%
Blast2go	integral to Golgi membrane	GO:0030173	Cellular Component	93%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cellulose synthase	IPR005150	-	0.0	93%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q6GUG6

Fln msg: Overlapping hits, possible frame ERROR between 219 and 206, your sequence is shorter than subject: 257 - 1084

Fln protein: RRDLGCHSFFSRNNALLGSSRLKFLQRVAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVQTLVSFFxxxxxxITVTLSLLAILEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGEDIDDMFADLYIVKWTSLMIPPITIMMVNLIAIAVGFSRTIYSEIPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLLAITISLLWVAINPPAGSSGIGGGFQFP*

Protein Length: 258

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTCTCACGTAATAATGCACTTCTTGGAAGCTCCCGTTTGAAATTCCTACAGCGAGTAGCATATCTCAATGTTGGCATTTATCCTTTCACTTCCGTATTCCTTATTGTGTACTGCTTCCTTCCAGCACTGTCTCTTTTCTCTGGGCAATTTATTGTGCAGACACTCGTGTCCTTTTTTxxxxxxxxxxxxxxxxxxATTACGGTAACTCTCTCTCTCCTGGCAATTCTAGAGATTAAGTGGTCTGGTATTGAATTAGAAGAATGGTGGAGAAATGAACAGTTCTGGTTGATAGGGGGTACTAGTGCTCACTTGGCAGCCGTCTTGCAAGGGTTGTTGAAGGTTATTGCTGGAATAGAAATTTCTTTCACACTGACTTCTAAGTCTGGAGGTGAGGATATTGATGATATGTTTGCTGATCTTTACATAGTGAAGTGGACTTCCCTTATGATTCCACCAATTACAATAATGATGGTTAACCTCATAGCTATAGCTGTTGGATTTTCAAGGACAATTTATAGTGAGATCCCTCAATGGAGCAAACTCATTGGTGGAGTTTTCTTCAGCTTCTGGGTGCTGGCGCATCTCTATCCATTTGCTAAGGGCTTGATGGGCAGAAGAGGAAAGACACCTACTATTGTCTTTGTATGGTCAGGTCTTCTTGCCATTACCATATCACTTCTATGGGTTGCTATAAATCCCCCAGCAGGTAGTTCAGGAATCGGTGGGGGCTTTCAATTTCCATAAGGGCTTCATAATTGCACGTGGCAGAAAAGTGAGTAGCGTCAGAAGATCCACTAGCCTTGGGTGCAATGTTTGCCTAATAGTTCGAGTCTTCTCTGGCATTTGGCGGCTCCACATCTGAAGGTGTGCATCTTGAAATTTGTGAATTCTTTGTCAGAAAATTTCAGATATATTTTTTGCCCTTTTTTTCCTGACAGCAGAGGTACTGGCCATTGTTACAAAATCTGTAAAGACTGTTGGCTTTCGAAAGGCCTTCAGTCTAATTGAGTTGGTGAGCATTAGCTATATAAATTGCTTTTTTGGAGAATATAATTTTGAATACAATTCCCTTTGCCGTACTGGGGGAACAGTTGAACATTTGGTCAATGAGGGTTAAGATTGTGGCAATTTTGGATCACATTCTATCCGCTTTCTAAATTACAGTTTGAACCCCGGGACTAGGCAGGTGGGAAATCACAGCTTTAGAGAATGAATTGTGTGGACTCCTGTTCTTCAGTATAATGAATATGCTCCAATCTGTTTTTGATCTAGTGCTGTTGTCTTTGAATCTTGGGACAAGAAGCACGATAAGCACTTGCAATATTGCGTCTACAATTTGTTTAGCGACAAAACATTTAGATCTCATTCATAGGCTCACTTTCATGGTCTATTTGCTTTATCTAAAACATGATATCATTTTGAATGCGGTTCCATTTACCTACTGGGGGAACAGTTGGACATTTTGTCAACGAGGGTTAAGGATGTGGTAATTGTGGACCTTACTTTATCCAATTTCATATTCATTTTGAACCACTGGACTAGGCATGTGGGAAATTTCAGCTTTAGAGAATGATTTGTATGATCTCTTGTTCTGGGATATAATGAATATGCTTCAATCTATTTCTAGAAATTT

Fln Alignment:

sp_v1.1_unigene22897___LKFLQRVAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFI---VQTLVSxxxxxxxVTLSLLAILEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGEDIDDMFADLYIVKWTSLMIPPITIMMVNLIAIAVGFSRTIYSEIPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLLAITISLLWVAINP
Q6GUG6_______________LKWLERFAYINTIVYPFTSLPLIAYCTLPAVSLLTGKFVIPQISTFASxxxxxxxISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSAHFFAVIQGLLKVLAGIDTNFTVTAKASD---DGEFGELYAFKWTTLLIPPTTLLVINLVGVVVGVADAINNGFQSWGPLLGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASVFSLFWVRIDP

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
839	80	20			0.995493
889		20		80	0.995493
1035	75			25	0.996473
1258		83	16		0.994512
1261	16			83	0.994512
1262		16		83	0.994512
1266		83	16		0.994512
1267	83		16		0.994512
1268		16	83		0.994512
1270	83		16		0.994512
1273	83	16			0.994512
1275	16		83		0.994512
1325		20	80		0.995493
1327	80			20	0.995493
1329	80		20		0.995493
1330	80			20	0.995493
1334		20	80		0.995493
1336	80			20	0.995493
1337		80		20	0.995493
1339	80		20		0.995493
1340		20		80	0.995493
1341	80			20	0.995493
1342	80		20		0.995493
1343			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain