SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22875

Length: 551 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene22875
GGGGACGTATTCAGCATAGCAGATCTTTCGCATCTTCCGAATACTGAGTACATTGTGAAGGCCACAGGCAAGGCGGAGCTCATCACTTCTCGAAAGTATGTGAATGCGTGGTGGGAGAACATTTCTTCCCGAGATTCGTGGAAGAAAATACGCGAAATGAGTAAAGCAGGCAGCAAGAAATGAACGGATCAGGTTCTGCCATTTGTGTGGTCTGTAATAAAACACATATTGGTGTAAGGCTGAAAATATGTAGGCCAGTACTTCTCTGCAGTTGAGATTGTGTTCGAACTTTCTGAATAATTAAGTACGCGTTTAGATTATAATAATGAAGGTTGTGATATTTGGAGATATCCAATGATTTTGGTTTAAATTGTGACTACGTGTGATGTAATCATTGGTACATTAAATTAGCAAAATGAAATTGTATTCACCCACAATGGGGTTTACATTAGATTAGAAATATTAGCAAAAGGGGATTGTGTTCAACTAGGGTTTACGGAAGAGTAGTTGAATATTCATAATTTTATAAAATTGTGTTCACCTGTTTACGG

Ace file of the UniGene sp_v1.1_unigene22875 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutathione-s-transferase theta, gst, putative n=1 Tax=Ricinus communis RepID=B9R8H1_RICCO	-	-	5.0e-15	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	glutathione s-transferase-like protein	-	-	3.39848e-25	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	3.39848e-25	79%
Blast2go	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	3.39848e-25	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKY6

Fln msg: your sequence is shorter than subject: 61 - 220

Fln protein: GDVFSIADLSHLPNTEYIVKATGKAELITSRKYVNAWWENISSRDSWKKIREMSKAGSKK*

Protein Length: 62

Fln nts: GGGGACGTATTCAGCATAGCAGATCTTTCGCATCTTCCGAATACTGAGTACATTGTGAAGGCCACAGGCAAGGCGGAGCTCATCACTTCTCGAAAGTATGTGAATGCGTGGTGGGAGAACATTTCTTCCCGAGATTCGTGGAAGAAAATACGCGAAATGAGTAAAGCAGGCAGCAAGAAATGA___ACGGATCAGGTTCTGCCATTTGTGTGGTCTGTAATAAAACACATATTGGTGTAAGGCTGAAAATATGTAGGCCAGTACTTCTCTGCAGTTGAGATTGTGTTCGAACTTTCTGAATAATTAAGTACGCGTTTAGATTATAATAATGAAGGTTGTGATATTTGGAGATATCCAATGATTTTGGTTTAAATTGTGACTACGTGTGATGTAATCATTGGTACATTAAATTAGCAAAATGAAATTGTATTCACCCACAATGGGGTTTACATTAGATTAGAAATATTAGCAAAAGGGGATTGTGTTCAACTAGGGTTTACGGAAGAGTAGTTGAATATTCATAATTTTATAAAATTGTGTTCACCTGTTTACGG

Fln Alignment:

sp_v1.1_unigene22875___GDVFSIADLSHLPNTEYIVKATGKAELITSRKYVNAWWENISSRDSWKKIREMSKAGSKK
A9NKY6_______________GDEFSIADLSHLPNTEYIVKATGKSELITSRKYVNAWWEDISSRDSWKKIREMSKAGNKK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
245		25		75	0.996473
247		75		25	0.996473
249		25		75	0.996473
423	64		35		1.0
522	11	88			0.999952
524	88			11	0.999952
531	11			88	0.999952
534		11		88	0.999952
536	11			88	0.999952
538		88	11		0.999952
540		11	88		0.999952
542	88	11			0.999952
543			11	88	0.999952
544	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain