SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22853

Length: 1361 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22853

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Synaptotagmin, putative n=1 Tax=Ricinus communis RepID=B9RI77_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	c2 domain-containing protein	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	89%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phosphoribosyltransferase C-terminal	IPR013583	-	0.0	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL63

Fln msg: Overlapping hits, possible frame ERROR between 335 and 322, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 314 - 758

Fln protein: S*PWLYSHSYPLLVLQASGVKKMGELQLAIRFSSSSLLNMMYTYSRPLLPKMHYLHPLSVTQLETLRYQAINIVALRLSRAEPPLKRDVVEYMVDVDSHMWSMRRSxxxxxxRIMSILSPLIAVGKWFNEVCNWRNPITTVLVHILFLILVWYPELILPTVFLYMFLIGLWNYRFRPRHPPHMDTRLSHAEAVHPDELDEEFDTFPTSKGIEIARMRYDRLRSVAGRIQTVVGDMATQGERLQSLLSWRDPRATAIFVSFCLLAAIILYVTPLQVIVVLAGLYQMRHPRFRRPLPSVHINFFRRLPARTDSML*

Protein Length: 315

Fln nts: TGTCTTGACCTTGGCTGTACTCCCATTCATATCCTTTGCTGGTGCTACAGGCTTCAGGAGTTAAAAAGATGGGCGAACTTCAATTGGCAATCCGTTTCTCAAGTTCATCACTGTTGAACATGATGTACACTTATTCAAGGCCTTTGTTGCCTAAGATGCATTATTTACATCCTCTCTCTGTGACTCAGCTTGAGACTCTCCGGTACCAAGCCATCAATATAGTAGCACTCCGACTCAGCCGGGCTGAGCCTCCTTTGAAAAGGGATGTAGTAGAGTATATGGTAGATGTGGATTCTCACATGTGGAGCATGCGCCGCAGTxxxxxxxxxxxxxxxxxxCGCATCATGTCTATTCTATCACCCCTGATAGCTGTTGGTAAGTGGTTTAATGAGGTTTGCAATTGGAGGAATCCTATCACTACAGTACTAGTCCACATTCTCTTTCTCATACTGGTTTGGTATCCTGAGCTGATCTTGCCGACTGTCTTCCTCTATATGTTCTTGATTGGCCTATGGAATTACCGTTTCCGACCAAGGCATCCACCACATATGGATACTCGCCTTTCTCATGCTGAGGCAGTGCATCCTGACGAACTTGACGAAGAATTCGATACATTTCCCACTTCAAAAGGTATTGAGATTGCCAGGATGCGATATGATCGTTTGAGGAGTGTTGCTGGCAGGATCCAGACTGTTGTTGGAGACATGGCTACACAAGGGGAGAGACTGCAAAGCCTCTTAAGCTGGAGAGATCCCCGTGCCACTGCAATTTTTGTCAGTTTTTGTTTGCTGGCTGCCATAATTCTATATGTTACCCCTCTCCAGGTAATAGTAGTGCTTGCAGGACTGTATCAAATGCGTCATCCAAGGTTTCGGCGCCCACTTCCTTCAGTTCACATAAATTTCTTTAGAAGGTTGCCTGCACGAACTGATAGTATGTTGTGAACAGTTTGGTCATGGAGGGTGTGTTTTTTGTTTTCTGGTTTCCCTTATTGTTTTACAAAGAACCCTAGTATTGAGATGATCCGCAATCTCATGGGTGGGATCACATTCAGAATTTCAGACTATTAAGATGGCATGACCAGGCTTTTGGCACCGTCTGGGGGTCTGTCCCAGTGGAAAGCTTTGGTGCGTGAGTTTGTTGTATGCTAATGGAACTTATGGATTATGTTTTCCTATTTTATGCTAAAACTCATTTGACTGTTATATAGGGTGAGGAGGGCTATCTTATCCATCATGAAAGATCCCAATGCAGTAATAAATAGTCAATATTTACACCAGGCATGACCAGAGAGTTGTAATTGTATCAGCCACTGGTTAATTAAAAAATAAGAAGGATCCGCTAAAACAGGTTAGATCAACTG

Fln Alignment:

sp_v1.1_unigene22853___LYSHSYPLLVLQASGVKKMGELQLAIRFSSSSLLNMMYTYSRPLLPKMHYLHPLSVTQLETLRYQAINIVALRLSRAEPPLKRDVVEYMVDVDSHMWSMRRSxxxxxRIMSILSPLIAVGKWFNEVCNWRNPITTVLVHILFLILVWYPELILPTVFLYMFLIGLWNYRFRPRHPPHMDTRLSHAEAVHPDELDEEFDTFPTSKGIEIARMRYDRLRSVAGRIQTVVGDMATQGERLQSLLSWRDPRATAIFVSFCLLAAIILYVTPLQVIVVLAGLYQMRHPRFRRPLPSVHINFFRRLPARTDSML
B8LL63_______________VYTHAYPLLVLHPSGVKKMGELHLAVRFSCSSLMNMMHIYTQPLLPKMHYLHPLSVQQLEALRYQAMQIVAMRLSRAEPPLRREVVEYMLDVDSHMWSMRRSxxxxxRIMNVLAALTAVGRWFSDICLWKNPVTTVLVHILFLILIWYPELILPTVFLYMFLIGIWQFRFRPRHPPHMDTRLSHAELVHPDELDEEFDTFPSTKSSDIVRMRYDRLRSVAGRIQTVVGDMATQGERLQHLLSWRDPRATTIFVIFCLIAAIILYTTPFQVIAVVFVMYVLRHPRFRHRLPSAPLNFFRRLPARSDSML

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
22	33			66	0.997452
24	66	33			0.997452
345	25			75	0.996473
346	25		75		0.996473
348		50		25	0.995533
349	25			75	0.996473
351	33			66	0.997452
352	33			66	0.997452
353		66	33		0.997452
356	33			66	0.997452
357	33	66			0.997452
359	33	66			0.997452
361	33	66			0.997452
944	50		50		1.0
1195	40			60	1.0
1230		66	33		0.997452
1239	66		33		0.997452
1292			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain