SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22847

Length: 1949 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22847
CGTCGTGACCTTGGCTGTCACTCAATTCCTGTTAATTTCTATTAATATAATAACTGTGTAAATATATAGACAGGCCGGCAGCTGGATATTCGCAGAGGTTGCCTCCGGATACCCATTTCATCAATGGAGCGTGACAAGTCCACTATCGACTTGTTTGATGATAGTGGTGATGAGAGTGAAAAAGACATTGAAGAGCAGCACGAAGACGAGCAAATCCATGAAGATGACGATGAAGAGTGGCTCACAGTGGGGAAGGAGGAGGCTTTTCGCCATGACAATTGTTCTCGGCGATCCTTCCAGTCCACAGAATGGCCTCAGAGTTACAGAGAATCTATGGATACATACAGCATTGCTGCATCTCCATCGGTATCCTTTGGTTGGATGCAACGCCAACCAAGCTTTGAACTTCCATGTTCTCAAAAAGGTAGTCTATTAACACAGGATGCAGCTTACTGGGATTCCAGGAGATCATTACTGGAAAAGGAGGGACTTGAAGAGAAGCCAACATTTATACCAGTGCCTACAGAAGCGGAAAATAGAGATGGATTTGATAAAAGGGTTGTTGACAGAGATGCTGGACATGCTATAGAATATCGAGGACAAGGCTGCAGCTTTGTGCAAGCAGTATTTAATGGAGTGAATGTACTGGCTGGTGTAGGCCTTCTTTCTACCCCATATACTATTTTAGAAGCGGGTTGGATAAGTCTAGCATTATTGTTGCTGTTTGCCTTCATTTGCTGCTACACAGGTATTCTCTTACGTTACTGTTTTGAGAGCGAGGAAGGCATCTATACTTATCCAGATATTGGAGAGGTTGCTCTTGGGAGACTTGGTCGTTTTTTTATCTCTATCGTTTTGTACTGTGAACTCTATGCATACTGTGTGGAGTTTATCATACTGGAGGGAGACAATTTAACAAGGCTTTTTCCAGGTTTTCATTTTGATATTGCTGGGACTGAACTGAGTTCTCTCTATTCATTTGGAATTTTAGCTGCAGTGATAGTGCTGCCGACTGTTTGGCTGAAAGATTTGCGCATTCTTTCTTATTTCTCAGCTGGTGGAGTGCTTGCAACTGTTTTGGTTATCTTCGCAGTTTTCTGGGTGGGAGCCATAGATGGGGTAGGTTTCCACCCCAGTGGTTCACTGGTGAATTGGTCCAACCTTCCTTTTGCAGTTGGTGTGTATGGGTTCTGTTACTCTGGCCATTCAGTCTTCCCAAACATCTATATGTCGATGGCGGACCGCACTCAATTTGACAAAGTACTAGTTGTGAGTTTTGTTTTATGTGTTATATTTTACGGTGGGATGGCAGTCATGGGATTTCTCATGTTTGGTCAGGGTACACTTTCACAGATCACTTTGAACTTGCCACAACAAGTTGTTGCCTCAAAAGTTGCAGTCTGGACAACTGTGATCAATCCATTTACCAAATATGCTCTATTATTAAATCCTGTTGCAAAGAGCTTGGAGGAGTTGCTACCTTTGCAAAATTCAACTAGTGAATGGTGGGCTTCCACTTTTATACGGACAATCCTCGTCATCTCGACAGTTGGTGTTGCTCTTCTTGTGCCTTTCTTTGGGTTAATGATGTCCTTGATTGGTTCCGTCCTAAGCATGCTGTTGGCTGTGATAATGCCATGCGTCTGTTTTTTACGAATAAGGGGCAAGAATGCAACCAAAATCCAGGTTGTTCTCTGCAATCTTATTATCTTAATAGGCCTACTGAGTGTAGTTATTGGGACCTATTCTTCAGTAGCTAGAATGGCAGAAAATTATTCTGACAGAGGAGTCACAAACGGGTTCCATTCATTGTAATTGTTTTCATGCATTCAGAAAAGCACATGAGAAACTTCCAAGGAATCACGGTCCACATTTTTTAGTTGCAACCCTACAATCTAGGGGCGAATATTTATAAGCTTTAAAATATTAATCCGAACTTCTATGTATAT

Ace file of the UniGene sp_v1.1_unigene22847

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	amino acid transporter family protein	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	amino acid transporter family protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A864

Fln msg: your sequence is longer than subject: 564 - 161

Fln protein: MERDKSTIDLFDDSGDESEKDIEEQHEDEQIHEDDDEEWLTVGKEEAFRHDNCSRRSFQSTEWPQSYRESMDTYSIAASPSVSFGWMQRQPSFELPCSQKGSLLTQDAAYWDSRRSLLEKEGLEEKPTFIPVPTEAENRDGFDKRVVDRDAGHAIEYRGQGCSFVQAVFNGVNVLAGVGLLSTPYTILEAGWISLALLLLFAFICCYTGILLRYCFESEEGIYTYPDIGEVALGRLGRFFISIVLYCELYAYCVEFIILEGDNLTRLFPGFHFDIAGTELSSLYSFGILAAVIVLPTVWLKDLRILSYFSAGGVLATVLVIFAVFWVGAIDGVGFHPSGSLVNWSNLPFAVGVYGFCYSGHSVFPNIYMSMADRTQFDKVLVVSFVLCVIFYGGMAVMGFLMFGQGTLSQITLNLPQQVVASKVAVWTTVINPFTKYALLLNPVAKSLEELLPLQNSTSEWWASTFIRTILVISTVGVALLVPFFGLMMSLIGSVLSMLLAVIMPCVCFLRIRGKNATKIQVVLCNLIILIGLLSVVIGTYSSVARMAENYSDRGVTNGFHSL*

Protein Length: 565

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCCTGTTAATTTCTATTAATATAATAACTGTGTAAATATATAGACAGGCCGGCAGCTGGATATTCGCAGAGGTTGCCTCCGGATACCCATTTCATCA_-_ATGGAGCGTGACAAGTCCACTATCGACTTGTTTGATGATAGTGGTGATGAGAGTGAAAAAGACATTGAAGAGCAGCACGAAGACGAGCAAATCCATGAAGATGACGATGAAGAGTGGCTCACAGTGGGGAAGGAGGAGGCTTTTCGCCATGACAATTGTTCTCGGCGATCCTTCCAGTCCACAGAATGGCCTCAGAGTTACAGAGAATCTATGGATACATACAGCATTGCTGCATCTCCATCGGTATCCTTTGGTTGGATGCAACGCCAACCAAGCTTTGAACTTCCATGTTCTCAAAAAGGTAGTCTATTAACACAGGATGCAGCTTACTGGGATTCCAGGAGATCATTACTGGAAAAGGAGGGACTTGAAGAGAAGCCAACATTTATACCAGTGCCTACAGAAGCGGAAAATAGAGATGGATTTGATAAAAGGGTTGTTGACAGAGATGCTGGACATGCTATAGAATATCGAGGACAAGGCTGCAGCTTTGTGCAAGCAGTATTTAATGGAGTGAATGTACTGGCTGGTGTAGGCCTTCTTTCTACCCCATATACTATTTTAGAAGCGGGTTGGATAAGTCTAGCATTATTGTTGCTGTTTGCCTTCATTTGCTGCTACACAGGTATTCTCTTACGTTACTGTTTTGAGAGCGAGGAAGGCATCTATACTTATCCAGATATTGGAGAGGTTGCTCTTGGGAGACTTGGTCGTTTTTTTATCTCTATCGTTTTGTACTGTGAACTCTATGCATACTGTGTGGAGTTTATCATACTGGAGGGAGACAATTTAACAAGGCTTTTTCCAGGTTTTCATTTTGATATTGCTGGGACTGAACTGAGTTCTCTCTATTCATTTGGAATTTTAGCTGCAGTGATAGTGCTGCCGACTGTTTGGCTGAAAGATTTGCGCATTCTTTCTTATTTCTCAGCTGGTGGAGTGCTTGCAACTGTTTTGGTTATCTTCGCAGTTTTCTGGGTGGGAGCCATAGATGGGGTAGGTTTCCACCCCAGTGGTTCACTGGTGAATTGGTCCAACCTTCCTTTTGCAGTTGGTGTGTATGGGTTCTGTTACTCTGGCCATTCAGTCTTCCCAAACATCTATATGTCGATGGCGGACCGCACTCAATTTGACAAAGTACTAGTTGTGAGTTTTGTTTTATGTGTTATATTTTACGGTGGGATGGCAGTCATGGGATTTCTCATGTTTGGTCAGGGTACACTTTCACAGATCACTTTGAACTTGCCACAACAAGTTGTTGCCTCAAAAGTTGCAGTCTGGACAACTGTGATCAATCCATTTACCAAATATGCTCTATTATTAAATCCTGTTGCAAAGAGCTTGGAGGAGTTGCTACCTTTGCAAAATTCAACTAGTGAATGGTGGGCTTCCACTTTTATACGGACAATCCTCGTCATCTCGACAGTTGGTGTTGCTCTTCTTGTGCCTTTCTTTGGGTTAATGATGTCCTTGATTGGTTCCGTCCTAAGCATGCTGTTGGCTGTGATAATGCCATGCGTCTGTTTTTTACGAATAAGGGGCAAGAATGCAACCAAAATCCAGGTTGTTCTCTGCAATCTTATTATCTTAATAGGCCTACTGAGTGTAGTTATTGGGACCTATTCTTCAGTAGCTAGAATGGCAGAAAATTATTCTGACAGAGGAGTCACAAACGGGTTCCATTCATTGTAA___TTGTTTTCATGCATTCAGAAAAGCACATGAGAAACTTCCAAGGAATCACGGTCCACATTTTTTAGTTGCAACCCTACAATCTAGGGGCGAATATTTATAAGCTTTAAAATATTAATCCGAACTTCTATGTATAT

Fln Alignment:

sp_v1.1_unigene22847___IFYGGMAVMGFLMFGQGTLSQITLNLPQQVVASKVAVWTTVINPFTKYALLLNPVAKSLEELLPLQNSTSEWWASTFIRTILVISTVGVALLVPFFGLMMSLIGSVLSMLLAVIMPCVCFLRIRGKNATKIQVVLCNXXXXXXXXXXXXXTYSSVARMAE
D5A864_______________MIYGGIAVMGYMMFGNELESQVTLNLPRTLVASKVAIYITLINPFAKFSLTITPLATALEELLPSSDSWLVLW-GIGIRTLLVISTVAVALALPFFGYLMALIGSSLSCSVSIIIPSICYLKLFGASISRHEMSLIFIILILGIVTGIVGTYSSLQKIAD

SNPs (tot: 83)

Position	A %	C %	G %	T %	Probability
25	75		25		0.996473
26	75			25	0.996473
27			25	75	0.996473
28	25			75	0.996473
34			25	75	0.996473
35	75		25		0.996473
36	75	25			0.996473
38			25	75	0.996473
43		25		75	0.996473
45	75	25			0.996473
58		14		85	0.993533
60			14	71	0.984337
61	71	28			1.0
62	57	14	14	14	0.979185
63	57	14	14	14	0.979185
64			14	85	0.993533
65	71			14	0.984337
66		28	14	57	1.0
67	71	14	14		0.984337
68		28		71	1.0
69	57			42	1.0
70		14	85		0.993533
71	71		14	14	0.984337
73	85			14	0.993533
74		14	85		0.993533
75			71	28	1.0
77	14	85			0.993533
78			85	14	0.993533
79		14	85		0.993533
80	14	85			0.993533
95	76	23			1.0
96			76	23	1.0
97	76			23	1.0
100		23		76	1.0
103		76		23	1.0
105	17			76	1.0
107		82		11	0.999919
108		11	76	11	0.999894
109	11	11	76		0.999894
113		76		23	1.0
114		76		23	1.0
115		76		23	1.0
116	76			23	1.0
568	80		20		0.995493
570	80			20	0.995493
572	80			20	0.995493
573		20	80		0.995493
577		20	80		0.995493
578	20	80			0.995493
1169		85	14		0.993533
1171		14		85	0.993533
1172			14	85	0.993533
1175	14	85			0.993533
1176	85	14			0.993533
1177		14	85		0.993533
1185		14	85		0.993533
1186	14			85	0.993533
1187	85	14			0.993533
1189	14		85		0.993533
1310		12		87	0.992554
1312			87	12	0.992554
1314	87		12		0.992554
1316	12			87	0.992554
1318	87	12			0.992554
1320			87	12	0.992554
1323	87	12			0.992554
1325			12	87	0.992554
1502	75	25			1.0
1508	75	8		16	0.99999
1514			81	18	0.999994
1515		18	72	9	0.999994
1516	18	81			0.999994
1517	9	18		72	0.999994
1520	27	72			1.0
1545	84		15		0.999986
1548			15	84	0.999986
1549		84		15	0.999986
1554		16	83		0.999991
1563		16		83	0.999991
1564	16		83		0.999991
1860		82	17		1.0
1894		83		16	0.994512
1895		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain