SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22840

Length: 1253 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22840

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transporter, putative	-	-	8.00001e-41	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	atg10 (autophagy 10) transporter ubiquitin activating enzyme	-	-	0.0	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD43

Fln msg: Overlapping hits, possible frame ERROR between 435 and 410,

Fln protein: MSSECLWDGTFSPGEFQVAALNLIDKWAMCCSTLQPWSWEPCPKLPWGASHDAxxxxxxxxxxLFKSQKSNITLLKVRMNSRRAMNLQIRLHWFRVLIMSPTSTLSILSTTALTEFLCSFSVVIVLMGNHWSGKILRRIFHPILINYLKNQNGHFLPKRSILI*

Protein Length: 165

Fln nts: TACATGGGGGACGAAGCCGCTAATTATTTAGACCAGATCAAACTGGTATTTATATTGGTACAAGACGGTGTCACTGTGTTTAGACAATGGATACCTGCAAGAGACGGTTGGTTAAAAGCGAAAGATTTAAATAGTTGGCAGCGTTGTTAACAAGTCTTTCAGATGTAGCAGAAGGTTTTATGGATTTGGGAACATTGTTGGAATTAAGAAGCGAAATTGCTAGAAGTACACAATTGACCATTTATTATC_-_ATGTCAAGTGAGTGCCTGTGGGATGGAACTTTCAGTCCAGGCGAATTTCAAGTTGCAGCACTTAATTTGATAGACAAATGGGCAATGTGCTGCTCTACATTGCAACCGTGGAGTTGGGAACCTTGCCCAAAATTACCCTGGGGTGCATCTCATGATGCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGTTCAAATCTCAAAAGAGCAACATTACTTTGCTGAAGGTGAGAATGAACTCGAGGAGGGCAATGAACCTACAGATCCGGCTACATTGGTTCAGAGTCTTGATAATGAGCCCCACCTCTACACTTTCCATATTGTCTACAACAGCTCTTACAGAGTTCCTGTGCTCCTTTTCCGTGGTCATAGTATTGATGGGAAACCACTGGAGTGGGAAGATATTGAGAAGGATTTTTCATCCTATACTCATCAACTACTTAAAGAATCAAAATGGACATTTCTTACCCAAGAGGAGCATCCTTATTTAA___ACCAGCCATGGTACTCCTTACATCCATGTGGAACTAGTGGGTGGATGGGCTTTCTTTTCTCTTGCAAGAGATCATCGAATTCATCTGCTAGATTGTTTGAACACATTTTGGCACAATCTGAGAAGAGTTCAGAACAAAAACGAGATAATGGGAAAAGCTCTCAACTCATGGAAAACACTACAATGGGTGTTAATAATTTTGGTAGAAGTACCATTGAAGCATCCACCTATAGCAATACCTTGAGAAGAGATATTGTTAATCAATACTTAATTGCATGGTTGTCAGTGGTTGGTCAAGTAGTTGGACTGAGAATTCCATTTGAAATGGCAAAGTTTTGTTCCCAGTCAGGATGAACTGTTCAAAAGCATAAAACTGTTTTCAGCATTCCTACTCCTACATTGCCAAAGTTTAGGCCTAAATTTCAAAATATCGAGATAATAACACTATGTTTTCTTTGTAGGGCAATGGATCTTGTTGACATAAATGAGGTGAATGCAATCATTCTTCCCTTTCC

Fln Alignment:

sp_v1.1_unigene22840___MSSECLWDGTFSPGEFQVAALNLIDKWAMCCSTLQPWSWEPCPKLPWGASHDAxxxxxxxxxLFKSQKSNITLLKVRMNSRRAMNLQIRLHWFRVXXXXXXXXXXXXXXXXXXEFLCSFSVVIVLMGNHWSGKILRRIFHPILINYLKNQNGHFLPKRSILI
D5AD43_______________MSSECLWDGTFSPGEFQVAAMNLIDKWAMCCSTSRPWRWEPCPKLPWGASHDAxxxxxxxxxLFKSQKSNIVSLKARMNLRRAMSLQIRLHWFRVLIMSPTSTLSILSTTVLTEFLCSFFVVTVLMGNHWIGNTLRRIFHHILINYSKNQNGHFLQKRSILI

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
78	66			33	1.0
79		33	33	33	1.0
80	16	16	16	50	0.988986
81		33	50	16	1.0
82	33		33	33	1.0
83		33	66		1.0
84			16	83	0.994512
85		33	16	50	1.0
86	33			66	1.0
177	33	66			1.0
191		66		33	1.0
198	66	33			1.0
761	33	66			0.997452
829		80	20		0.995493
832		80		20	0.995493
833			20	80	0.995493
835		20	80		0.995493
836	80	20			0.995493
840			20	80	0.995493
841		20		80	0.995493
844	80	20			0.995493
847	80			20	0.995493
929		16		83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain