SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22802

Length: 1001 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22802

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Oligopeptide transporter OPT family (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I246_POPTR	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	metal-nicotianamine transporter ysl3	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oligopeptide transporter OPT superfamily	IPR004813	-	0.0	81%

Full-Lengther Next Prediction

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
363			28	71	1.0
365		28	71		1.0
366		71	28		1.0
367	71			28	1.0
370		28		71	1.0
374		85		14	0.993533
375			14	85	0.993533
376	71		14	14	0.984337
378	14		71	14	0.984337
379		14	85		0.993533
381	14	14			0.984337
382	14		85		0.993533
385	14			85	0.993533
386		14		85	0.993533
408		85		14	0.993533
438	14			85	0.993533
472	87	12			0.992554
473			12	87	0.992554
479		87	12		0.992554
480	87			12	0.992554
481			12	87	0.992554
482	12			87	0.992554
492			85	14	0.993533
493		14	85		0.993533
495			85	14	0.993533
497	14	85			0.993533
524			85	14	0.993533
531	87		12		0.992554
533		12		87	0.992554
538	12			87	0.992554
539		12		87	0.992554
540		12	87		0.992554
547	87			12	0.992554
549		84		15	1.0
550	5	15	78		1.0
555	90		10		0.999898
560	80		5	15	1.0
565			90	10	0.999898
571	90			10	0.999898
579	89		10		0.999919
585			10	89	0.999919
658	88			11	0.999937
670	6	90			0.997073
815			83	16	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
380	397	TGCTTT TGCTTT TGCTTT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain