SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22771

Length: 2051 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22771
CGTCGTGACCTTGGCTGTCACTCAGTTGGTAGTTATAATGAAAGGAGAGGATGGGGACCTTGGAAATTGAAAGCCAGCTATTGACTAATATGGCCATTGGCCTAAAGGGATCTTTGATTTGTTTGATAAAAAGCCAGCCTGTTTGACAAATCTGGCTTTCGACAGAGGAGTATGGATTTATAACACTGCGCGTCACAGCAATTTGGAATTCATATAGAAGCCAAGCTCAGCCCTGAGCTCTGCAAGGGAAAGGGAGGAACATTCTGTCTGCATTGAAATTTTATCAGTGGTTTTAATTCATCTGGCTAGGAATGAATTACAGACGATTGGCGTCAGAGAAATTGGGTTCAAATGGTGGAGGTTTTAATTTCTTTGCCATGGAAAGCTCTGGGAATTTCAGTTTTGCTTCCCCAATTGCAGGCGCCATATTGGCCGGTAATAGCACTGCGCCTCCTCATTCTGATAACAGTAATGATGCCTACAATGAATTAAATACTCGATTTAATCCATCCATGGCGATTATTATCGTTGTTCTGCTGACTGCGTTTTTCTTCATGGGGTTTTTCTCGATCTACGTTCGCCGCTGCGCGGAAGAAGATGAAAGCCTGGAAACTTCGCGGAGAGGAGCGCGGGGAGCCAATGCACAGGCCCGTGGGGAGGAAGAGGGCAACCGTGGTCTCGACAGAGCCGTCATCGAAAGCTTCCCGGTGTTCAGCTACGATCTCGTGAAGGGCCTCAAGGCGCAAACCAGAGAAACGCTCGAGTGCGTAGTCTGTCTCAACGAATTCGAGGACGACGAGCAGCTCCGCTTGCTGCCCAAGTGTAGCCATGCTTTTCATCCAGAGTGCATCGATATGTGGCTCCTCTCTCACACAACGTGCCCCGTCTGCAGAAAAAGTCTGGTGCCCACGGAGGATGCTAATCCCACTGAGACTGGCGACGGAATCATTGAGCCACCCGAGATCACGCCACCGGAGGAGGTAACGATTGTGGTGGACGGAGCGAGGAGCAGCAGCAGAAACGGGAGCGTTCGCAGGGACAACGTTATCGAGATTCCCGTGGCTCCTGAGAGTGCCGATTCTCAAAAACCGCTCGGCGTGATGGGGACAAATAAATTCCGTCGCTCGCATTCAACCGGGCATTCGCTGGTAAGGTTGCCCAAAGATTTGGATCAACCGGCCACTGAATGGTATATTTGTACGGCAGAGGGGCTCACCCCTGGTCTGCACAGGAACTGTAGCCTGACCGGGCGGGCTCGCTCGCGCTCTCAGAAACCGTCGAGCTCTAAATCCCGCCCCGCTCTATCAAAGCAAGATTCCCTGAGAGGCGCCACTTCTAGCAGCGCAGAGGCCGAGACAAGTTCGGGCACTGGATCAGGGCTTCGTTGGTATGAGCGCGGACTGAGATCCGAGCGATTTTCCATTCCATCCATGAATCCTGCCTCGTTTTTAAGGACACATTCAGAGCACAGGGCGCCTTCCTATTCCAGGTATCAAGAATCCTCTGCTGGTTCTCAACAGGAGCCGAAGTTATATATGCAGTCTCTGAAGACAACACTGAAGAGGCTCACTGGACGAGACAGAGAATTGACAGACAATTCGCAGAGCGGGCGAATGTCTTCCATGAGGTCTGCAGATAATTCACAAAGCGGACGCGCATCTTTCCGTAAGGCTCCAGAAGAAACCGTCGGTCCTATTACTGCATAGCAAGTTGTGAGTCTGTCCGGGCAGAAAATTGGGGATCCAAGAGTCGGTATAATATAATTAGAAACCAAACGCTAAAGCTACTGCTACAGTTTCATATTTTGTTGTTCAGGTATTTCAATTTTGGCGATCTTATCAGATGATTTACCTTCTGAAAGAGAGACGTGTACAGTCAATATTTTCATTTTAGATATTCTTCAATTTTGCGTATGGTTCAGTCATTATTGCATTGTTTAGTTTTATTTTGAGGGCATATGAAGCTGGTTTTCCATGAATTTATGTAGAGCTGTTTTTCACTCTGTCAATGATTTTTTTTTATTGAATTCTGAAATTTGGAGGATTGAAAGG

Ace file of the UniGene sp_v1.1_unigene22771

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ring finger protein, putative	-	-	3.0e-40	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	ring finger	-	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN45

Fln msg:

Fln protein: MNYRRLASEKLGSNGGGFNFFAMESSGNFSFASPIAGAILAGNSTAPPHSDNSNDAYNELNTRFNPSMAIIIVVLLTAFFFMGFFSIYVRRCAEEDESLETSRRGARGANAQARGEEEGNRGLDRAVIESFPVFSYDLVKGLKAQTRETLECVVCLNEFEDDEQLRLLPKCSHAFHPECIDMWLLSHTTCPVCRKSLVPTEDANPTETGDGIIEPPEITPPEEVTIVVDGARSSSRNGSVRRDNVIEIPVAPESADSQKPLGVMGTNKFRRSHSTGHSLVRLPKDLDQPATEWYICTAEGLTPGLHRNCSLTGRARSRSQKPSSSKSRPALSKQDSLRGATSSSAEAETSSGTGSGLRWYERGLRSERFSIPSMNPASFLRTHSEHRAPSYSRYQESSAGSQQEPKLYMQSLKTTLKRLTGRDRELTDNSQSGRMSSMRSADNSQSGRASFRKAPEETVGPITA*

Protein Length: 466

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGGTAGTTATAATGAAAGGAGAGGATGGGGACCTTGGAAATTGAAAGCCAGCTATTGACTAATATGGCCATTGGCCTAAAGGGATCTTTGATTTGTTTGATAAAAAGCCAGCCTGTTTGACAAATCTGGCTTTCGACAGAGGAGTATGGATTTATAACACTGCGCGTCACAGCAATTTGGAATTCATATAGAAGCCAAGCTCAGCCCTGAGCTCTGCAAGGGAAAGGGAGGAACATTCTGTCTGCATTGAAATTTTATCAGTGGTTTTAATTCATCTGGCTAGGA_-_ATGAATTACAGACGATTGGCGTCAGAGAAATTGGGTTCAAATGGTGGAGGTTTTAATTTCTTTGCCATGGAAAGCTCTGGGAATTTCAGTTTTGCTTCCCCAATTGCAGGCGCCATATTGGCCGGTAATAGCACTGCGCCTCCTCATTCTGATAACAGTAATGATGCCTACAATGAATTAAATACTCGATTTAATCCATCCATGGCGATTATTATCGTTGTTCTGCTGACTGCGTTTTTCTTCATGGGGTTTTTCTCGATCTACGTTCGCCGCTGCGCGGAAGAAGATGAAAGCCTGGAAACTTCGCGGAGAGGAGCGCGGGGAGCCAATGCACAGGCCCGTGGGGAGGAAGAGGGCAACCGTGGTCTCGACAGAGCCGTCATCGAAAGCTTCCCGGTGTTCAGCTACGATCTCGTGAAGGGCCTCAAGGCGCAAACCAGAGAAACGCTCGAGTGCGTAGTCTGTCTCAACGAATTCGAGGACGACGAGCAGCTCCGCTTGCTGCCCAAGTGTAGCCATGCTTTTCATCCAGAGTGCATCGATATGTGGCTCCTCTCTCACACAACGTGCCCCGTCTGCAGAAAAAGTCTGGTGCCCACGGAGGATGCTAATCCCACTGAGACTGGCGACGGAATCATTGAGCCACCCGAGATCACGCCACCGGAGGAGGTAACGATTGTGGTGGACGGAGCGAGGAGCAGCAGCAGAAACGGGAGCGTTCGCAGGGACAACGTTATCGAGATTCCCGTGGCTCCTGAGAGTGCCGATTCTCAAAAACCGCTCGGCGTGATGGGGACAAATAAATTCCGTCGCTCGCATTCAACCGGGCATTCGCTGGTAAGGTTGCCCAAAGATTTGGATCAACCGGCCACTGAATGGTATATTTGTACGGCAGAGGGGCTCACCCCTGGTCTGCACAGGAACTGTAGCCTGACCGGGCGGGCTCGCTCGCGCTCTCAGAAACCGTCGAGCTCTAAATCCCGCCCCGCTCTATCAAAGCAAGATTCCCTGAGAGGCGCCACTTCTAGCAGCGCAGAGGCCGAGACAAGTTCGGGCACTGGATCAGGGCTTCGTTGGTATGAGCGCGGACTGAGATCCGAGCGATTTTCCATTCCATCCATGAATCCTGCCTCGTTTTTAAGGACACATTCAGAGCACAGGGCGCCTTCCTATTCCAGGTATCAAGAATCCTCTGCTGGTTCTCAACAGGAGCCGAAGTTATATATGCAGTCTCTGAAGACAACACTGAAGAGGCTCACTGGACGAGACAGAGAATTGACAGACAATTCGCAGAGCGGGCGAATGTCTTCCATGAGGTCTGCAGATAATTCACAAAGCGGACGCGCATCTTTCCGTAAGGCTCCAGAAGAAACCGTCGGTCCTATTACTGCATAG___CAAGTTGTGAGTCTGTCCGGGCAGAAAATTGGGGATCCAAGAGTCGGTATAATATAATTAGAAACCAAACGCTAAAGCTACTGCTACAGTTTCATATTTTGTTGTTCAGGTATTTCAATTTTGGCGATCTTATCAGATGATTTACCTTCTGAAAGAGAGACGTGTACAGTCAATATTTTCATTTTAGATATTCTTCAATTTTGCGTATGGTTCAGTCATTATTGCATTGTTTAGTTTTATTTTGAGGGCATATGAAGCTGGTTTTCCATGAATTTATGTAGAGCTGTTTTTCACTCTGTCAATGATTTTTTTTTATTGAATTCTGAAATTTGGAGGATTGAAAGG

Fln Alignment:

sp_v1.1_unigene22771___MNYRRLASEKLGSNGGGFNFFAMESSGNFSFASPIAGAILAGNSTAPPHSDNSNDAYNELNTRFNPSMAIIIVVLLTAFFFMGFFSIYVRRCAEEDESLETSXXXXXXXXXXXXXXXXXXRGLDRAVIESFPVFSYDLVKGLKAQTRETLECVVCLNEFEDDEQLRLLPKCSHAFHPECIDMWLLSHTTCPVCRKSLVPTEDANPTETGDGXXXXXXXXXXXXXXXXXDGARSSS-RNGSVRRDNVIEIPVAPESADSQKPLGVMGTN---KFRRSHSTGHSLVRLPKDLDQPATEWYICTAEGLTPGLHRNCSLTGXXXXXXXXXXXXXXXXXLSKQDSLRXXXXXXXXXXXXXXXXXXLRWYERGLRSERFSIPSMNPASFLRTHSEHRAPSYSRYQESSAGSQQEPKLYMQSLKTTLKRLTGRDRELTDNSQSGRMSSMRSADNSQSGRASFRKAPEETVGPITA
B8LN45_______________MKSRRFALEKSVSNGGGFGLIVMDNSVNLSFASPFFGVLLADNSSAP--SDNNSDPYGGLNNRFNPSMAIIIVVLLSAFFFMGFFSIYVRRCAGEDDSFRASRQGARGANAQARRQDDGTHGLDRAVIESFPVFSYDLVKGLKAQTKETLECAVCLNEFEDDEQLRLLPKCSHAFHPECIDMWLFSHTTCPVCRTSLVPTDDANPTGTDYGIIEPPEITPPDEITVVVDGTRGSSRRNGSLRRDNAVESPAASEMADSQEPLRVMGLNQAKKFRRSHSTGHSLVRLPKDLDQSATEWYISTAEGLTPGLHRNCSLTARPHSRSQRSLASKSRPALAKQDSLRGAASFSEDAGTSSGTGSGLRWYERGLRSERLSLSSMNPSSFLRTHSEHRAPSYSRYQDSSAGSQQEQKAYLQSLKSTLKRLTGRDREWTDNSLSGRRSSRRAADNSQSGRGTSARAADESRGPISA

SNPs (tot: 96)

Position	A %	C %	G %	T %	Probability
135	83	16			0.994512
138		83	16		0.994512
139	83			16	0.994512
145			16	83	0.994512
146		16		83	0.994512
149	83			16	0.994512
153	83	16			0.994512
156	16			83	0.994512
164	50		50		1.0
189	75			25	1.0
194	25	75			1.0
195		25	75		1.0
197			75	25	1.0
199		75	25		1.0
200	75		25		1.0
202	75			25	1.0
204		75		25	1.0
205	75	25			1.0
208		25		75	1.0
210		25	75		1.0
211	25		75		1.0
233		58		41	1.0
257	23		76		1.0
260	76		23		1.0
423	38		61		1.0
545		50	50		1.0
816			12	87	0.992554
818		12	87		0.992554
819		87	12		0.992554
822	12	87			0.992554
825	87			12	0.992554
826	87			12	0.992554
830		12		87	0.992554
831	87			12	0.992554
833		87		12	0.992554
837		12	87		0.992554
838	12	87			0.992554
897	80	20			0.995493
898			80	20	0.995493
899	80			20	0.995493
900	80		20		0.995493
901	80		20		0.995493
902	80	20			0.995493
903	80			20	0.995493
908		20	80		0.995493
909	20		80		0.995493
959	20		80		0.995493
961		80	20		0.995493
962	80			20	0.995493
964		80	20		0.995493
965		80		20	0.995493
968		20	80		0.995493
969	80			20	0.995493
971		80	20		0.995493
972	80		20		0.995493
975		75		25	0.996473
979		75		25	0.996473
980		25	75		0.996473
981	25		75		0.996473
1152		57	14	14	0.979185
1153			14	71	0.984337
1154	28	14	28	28	1.0
1155		14	85		0.993533
1156		28		71	1.0
1157	57		28	14	1.0
1158	85			14	0.993533
1159		14	85		0.993533
1160		14	85		0.993533
1161		14		71	0.984337
1162	14			85	0.993533
1164			14	14	0.984337
1166	28			14	1.0
1167		71	28		1.0
1171	85			14	0.993533
1172	85	14			0.993533
1173	14		85		0.993533
1248	85	14			0.993533
1251		85	14		0.993533
1257			85	14	0.993533
1262		14	85		0.993533
1263	14		85		0.993533
1267	14		85		0.993533
1345	12	87			0.992554
1347	87		12		0.992554
1349		87	12		0.992554
1375	37		62		1.0
1385	88		11		0.923564
1386			88	11	0.923564
1387		11	88		0.923564
1389		88		11	0.923564
1390			11	88	0.923564
1391	11			88	0.923564
1393		11	88		0.923564
1399	88		11		0.923564
1401		11	88		0.923564
1403			88	11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain