SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22756

Length: 2143 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22756
CGTCGTGACCTTGGCTGTCACTGGACTTCGGTTCGGAGTTTTCTGTTTTTGGAGGTTTCCGCTATTTGAAGAGTTTTATGCCATGCTTTATCGATGCTTGTTATACTATAAAGGCCGTGTTTGTGTATTTCCAATGTTCTATACCCTTCGTTGCCTCTAAATTGTCGTCGTCTCCGAGGATTGAGTATAGAAGGAACTGTCAGAAGCCTCTTCCAGAATTTAGCGGATTCGGTTTGACTCATTCTCGCCATTTAATTTGAAGGTTTGTTGCTTTCGGATTTCGCATTCTTGAGGTTCTTTCTCAGCAAGTCCATGGCGGGAAAATTGGACCAGTGAAGCAGCCGTGATTGTATTACTGCATATGTGTCTTCTGTATTCATGTAGTCAACACGTATCTGATTTTGACTATCTTCTACCAGTGGACAACTTTGTTAGTATGGTGCACTTTTGAAATGTGTAGTACAACAGGTTATATACTTGAAAACTATATATTAGATCACATATGCCTTCTGTATTGGCAGACAGGTAGAAGTAGCAGTTAATTGATAGAGGGTACATTGATTTATCCTTGAGTTCAATATATAGGTCCTTATCTGAGCAACGACACTTCAAGGGAAACTAAGTTGTGTGAACAAATGGTGACATATGAGCCAGATCCAGATGTTGTCCGTTGGGGTCTCCATCTTCTTGATGGAGATTCTTTTTCCAATACAGGTCATCGGATTAATGCCACTCAATTGAGTGATACTACTCTATATCGGGGGATTCAGATTATGGAACCTCAATTGCCAAGAGAGCCCACTAATGTAGAAAATGATGAGATCATTGCTCATGCTCTTCAAGAAGAATTATCTCATCTGGCAGCTGTGGAAGCATCAGGTGACCCACACCCTACTGAAGATCATTTACAGGCCTCAATTCTTGCACAGGATTGGCTTGGTCCAAGCCAGCGAATATCTAGTGAAGGTGCATGGCATGTTGAGGAACAACAAGAATCAAGTCATGAACAAGAGGTTGCAAGTCCGTGCTCAAGTCTGGAAAGAAGGTCTCAAGATGGTTCTGAGGATGTCTATACATCTCTTGAGCTATTGGATGAGTTTTCTGCTTTGGATGGGGAAGTTGGCAAAAGATTGACGCAGATGAACTCTGTGCCTCATATTCCTAGGATTAATGGAGACATTCCTACCATGGATGAAGCAACCACAGACCATCAAAGGCTGTTGGACAGGTTAACACTCTATGATTTGCGTGAACTTAAAATTCCTGGAGATGGAAACTGCCAGTTTCGAGCACTCTCTGATCAGTTTTATCGAACACCTGAGCATCATGAGTTTGTCAGGCAACAGGTTGTTGACCAGCTAAAATCTGAACCAGAATTATATGAAGGATATGTACCTATGGCATATGATGAGTATCTGAAAAAAATTAGCGAGCGTGGCGAATGGGGCGACCATGTTACTTTGCAGGCTGCTGCAGATTGTTATGGAGTTAAAATATGTGTGGTGACATCCTTCAAGGATACTTGCTTCATTGAAATTCTACCAAAAGTTCAACGTTCAAAACGAGTGATATTCTTGAGCTTTTGGGCAGAAGTGCACTATAATTCCATCTATCCTGAAGGGGAGCTACCAAATTTTTGTGAAAATAAGAGGAAGAAGCGTTGGTGGATCTTTGGACATAGACACTGAAGTTATAATGTATTCTTTCTTCATGGTATCATAAACTGAATCTCTTGCCTGTTTATGAGATTTTAGTGCTGATGTCTGTTTATCAACTATTATCTTGTACCTACTATTGTTATCAAGTCCTCTTAAGAGTGGCAGGTTTTTCTCTCATATACTCATTAGGAGGTCATATCGTCTTCCTTGGAGAAATAGAAAAGAAGAGACATTTGAAAGTATATCTGGCTAAGAGAAAGAGCAAATTCTGTGTCTTTTCTCATGGATTTTCAGTCAATCCATTGGAGACTAGGTATAGGAAGCATCTGTCTGAGTGATTGAAACCTCCTAATTGCTGCTTCATAATGTCAAAGCAGTGCCCCTACCATTAATCATGATGTAGTTGCCGGAAATGTTATAATGACTGCCACTAAGCAGTAATGGATCCTTATATCATAATCAATGAAGAAAATTGTTTATATTTT

Ace file of the UniGene sp_v1.1_unigene22756

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cysteine-type peptidase	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	otu-like cysteine protease family protein	-	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8J8

Fln msg: your sequence is longer than subject: 351 - 225

Fln protein: MVTYEPDPDVVRWGLHLLDGDSFSNTGHRINATQLSDTTLYRGIQIMEPQLPREPTNVENDEIIAHALQEELSHLAAVEASGDPHPTEDHLQASILAQDWLGPSQRISSEGAWHVEEQQESSHEQEVASPCSSLERRSQDGSEDVYTSLELLDEFSALDGEVGKRLTQMNSVPHIPRINGDIPTMDEATTDHQRLLDRLTLYDLRELKIPGDGNCQFRALSDQFYRTPEHHEFVRQQVVDQLKSEPELYEGYVPMAYDEYLKKISERGEWGDHVTLQAAADCYGVKICVVTSFKDTCFIEILPKVQRSKRVIFLSFWAEVHYNSIYPEGELPNFCENKRKKRWWIFGHRH*

Protein Length: 352

Fln nts: CGTCGTGACCTTGGCTGTCACTGGACTTCGGTTCGGAGTTTTCTGTTTTTGGAGGTTTCCGCTATTTGAAGAGTTTTATGCCATGCTTTATCGATGCTTGTTATACTATAAAGGCCGTGTTTGTGTATTTCCAATGTTCTATACCCTTCGTTGCCTCTAAATTGTCGTCGTCTCCGAGGATTGAGTATAGAAGGAACTGTCAGAAGCCTCTTCCAGAATTTAGCGGATTCGGTTTGACTCATTCTCGCCATTTAATTTGAAGGTTTGTTGCTTTCGGATTTCGCATTCTTGAGGTTCTTTCTCAGCAAGTCCATGGCGGGAAAATTGGACCAGTGAAGCAGCCGTGATTGTATTACTGCATATGTGTCTTCTGTATTCATGTAGTCAACACGTATCTGATTTTGACTATCTTCTACCAGTGGACAACTTTGTTAGTATGGTGCACTTTTGAAATGTGTAGTACAACAGGTTATATACTTGAAAACTATATATTAGATCACATATGCCTTCTGTATTGGCAGACAGGTAGAAGTAGCAGTTAATTGATAGAGGGTACATTGATTTATCCTTGAGTTCAATATATAGGTCCTTATCTGAGCAACGACACTTCAAGGGAAACTAAGTTGTGTGAACAA_-_ATGGTGACATATGAGCCAGATCCAGATGTTGTCCGTTGGGGTCTCCATCTTCTTGATGGAGATTCTTTTTCCAATACAGGTCATCGGATTAATGCCACTCAATTGAGTGATACTACTCTATATCGGGGGATTCAGATTATGGAACCTCAATTGCCAAGAGAGCCCACTAATGTAGAAAATGATGAGATCATTGCTCATGCTCTTCAAGAAGAATTATCTCATCTGGCAGCTGTGGAAGCATCAGGTGACCCACACCCTACTGAAGATCATTTACAGGCCTCAATTCTTGCACAGGATTGGCTTGGTCCAAGCCAGCGAATATCTAGTGAAGGTGCATGGCATGTTGAGGAACAACAAGAATCAAGTCATGAACAAGAGGTTGCAAGTCCGTGCTCAAGTCTGGAAAGAAGGTCTCAAGATGGTTCTGAGGATGTCTATACATCTCTTGAGCTATTGGATGAGTTTTCTGCTTTGGATGGGGAAGTTGGCAAAAGATTGACGCAGATGAACTCTGTGCCTCATATTCCTAGGATTAATGGAGACATTCCTACCATGGATGAAGCAACCACAGACCATCAAAGGCTGTTGGACAGGTTAACACTCTATGATTTGCGTGAACTTAAAATTCCTGGAGATGGAAACTGCCAGTTTCGAGCACTCTCTGATCAGTTTTATCGAACACCTGAGCATCATGAGTTTGTCAGGCAACAGGTTGTTGACCAGCTAAAATCTGAACCAGAATTATATGAAGGATATGTACCTATGGCATATGATGAGTATCTGAAAAAAATTAGCGAGCGTGGCGAATGGGGCGACCATGTTACTTTGCAGGCTGCTGCAGATTGTTATGGAGTTAAAATATGTGTGGTGACATCCTTCAAGGATACTTGCTTCATTGAAATTCTACCAAAAGTTCAACGTTCAAAACGAGTGATATTCTTGAGCTTTTGGGCAGAAGTGCACTATAATTCCATCTATCCTGAAGGGGAGCTACCAAATTTTTGTGAAAATAAGAGGAAGAAGCGTTGGTGGATCTTTGGACATAGACACTGA___AGTTATAATGTATTCTTTCTTCATGGTATCATAAACTGAATCTCTTGCCTGTTTATGAGATTTTAGTGCTGATGTCTGTTTATCAACTATTATCTTGTACCTACTATTGTTATCAAGTCCTCTTAAGAGTGGCAGGTTTTTCTCTCATATACTCATTAGGAGGTCATATCGTCTTCCTTGGAGAAATAGAAAAGAAGAGACATTTGAAAGTATATCTGGCTAAGAGAAAGAGCAAATTCTGTGTCTTTTCTCATGGATTTTCAGTCAATCCATTGGAGACTAGGTATAGGAAGCATCTGTCTGAGTGATTGAAACCTCCTAATTGCTGCTTCATAATGTCAAAGCAGTGCCCCTACCATTAATCATGATGTAGTTGCCGGAAATGTTATAATGACTGCCACTAAGCAGTAATGGATCCTTATATCATAATCAATGAAGAAAATTGTTTATATTTT

Fln Alignment:

sp_v1.1_unigene22756___QDGSEDVYTSLELLDEFSALDGEVGKRLTQMNSVPHIPRINGDIPTMDEATTDHQXXXXXXXXXXXXXXKIPGDGNCQFRALSDQFYRTPEHHEFVRQQVVDQLKSEPELYEGYVPMAYDEYLKKISERGEWGDHVTLQAAADCYGVKICVVTSFKDTCFIEILPKVQRSKRVIFLSFWAEVHYNSIYPEGELPNFCENKRKKRWWIF
D5A8J8_______________QDIEDDRMIATILSEEYASLDRSVGRRLSHLQSIPHTPRINVYIPSANEATLDHQRLHDRLTIYGLCELKIQGDGNCQFRALSDQLYHSPEYHKYVRKEVVKQLKSFQSAYEGYVPMRYKDYLKKMKKSGEWGDHVTLQSAADRFGAKICLVTSFRDTCFIEIVPKQLNQRKELWLSFWSEVHYNSLYEIGEVP---IRVQKKKHWLF

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
22		66		33	0.997452
23			33	66	1.0
24		66	33		0.997452
25	66		33		0.997452
36			66	33	0.997452
99	25			75	0.996473
102			25	75	0.996473
103			25	75	0.996473
150		71	28		1.0
152		28		71	1.0
155		71		28	1.0
157	28			71	1.0
161	57	28		14	1.0
290			10	90	0.90298
305	90	10			0.90298
410		12		87	0.992554
833	85			14	0.993533
836		85	14		0.993533
843	85	14			0.993533
844			85	14	0.993533
845	85	14			0.993533
1303	10	90			0.90298
1329		12		87	0.992554
1404	90		10		0.90298
1406	90	10			0.90298
1410		10		90	0.90298
1411		10	90		0.90298
1412	90			10	0.90298
1414			10	90	0.90298
1415	90	10			0.90298
1417		90	10		0.90298
1419	30		10		1.0
1420		11	88		0.923564
1422	87	12			0.992554
1423	87			12	0.992554
1424	87	12			0.992554
1480	16			16	0.988813
1651	83	16			0.994512
1653	85	14			0.993533
1657	85	14			0.993533
1658		14	85		0.993533
1659	85			14	0.993533
1660	85			14	0.993533
1665		14		85	0.993533
1666	14		85		0.993533
1667		14	85		0.993533
1669		14	85		0.993533
1677		22	77		0.999999
1679	77			22	0.999999
1681	77		22		0.999999
1687	77			22	0.999999
1688		77		22	0.999999
1689			22	77	0.999999
1691	77	22			0.999999
1692	77			22	0.999999
1695		22		77	0.999999
1698	77	22			0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain