SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22708

Length: 1731 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22708

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9R831_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	serine-threonine protein plant-	-	-	65%

Source	InterPros	Term	Type	Identity
Blast2go	Armadillo	IPR000225	-	65%
Blast2go	Leucine-rich repeat	IPR001611	-	65%
Blast2go	Leucine-rich repeat, typical subtype	IPR003591	-	65%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV54

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MASKSSSTLTLALVLSQFLYSAQLGGARTVAGDVEALKALKDSVDANSIQAGSCLSSWNFSADPCDSAFGKLFTCGLRCDGGRVTEVTLDESGYNGTLPPEVGQLSSLQILDLSSNAFHGAIPSSIGNLTSLVRLLLSRNSFSGNIPGSLAALSNLEQLSLDDNLLDGPIPATFSNLTSLVQLELNGNNLSGEFPLLSALGKLKFLDVSNNRFSGSLPAALPPSLVELVFRNNGLSGELGLNLAELGMLQVVDLSHNELTGPLPSGFFDHPALQQLTLSYNRFTSLQVPGSYGTDSQLIEVDLSYNRIHGPLPVFMATMPRLSALSLQYNYFTGTIPLQYAKRVSDSIAGKEPLVRLFLAGNFLFGEIPAPFLNLSSNEVNVTFGDNCLLDCPESFFFCQGGDQKAISTCRAFTRLRL*

Protein Length: 420

Fln nts: ATGGGCTGATCTGACAAGGATGACAATTGTCAGTGGTTCAGTCCTCAGTACTTTCCACATTCAAAATTACCACTGCAACGCCACATTATTTATTTGTTGTCCATCGACCCATGGAGAGTACGTGAGGTGAGGTGAGGTGAGGTGAGGTTTTCCTTTCTCCTGTAACAGGGGCTTAGCTTTTACAGAGATTCAAAATCCATTGAGTGTGTTGCAGAGCTTGAAGGTGTGGAAGAGCC_-_ATGGCCTCCAAAAGCAGCTCCACGCTCACTCTCGCTCTTGTTCTTTCGCAGTTCTTATATTCAGCTCAGTTGGGAGGAGCGCGCACAGTGGCCGGGGATGTGGAGGCTCTCAAAGCCCTAAAGGATTCAGTGGATGCGAATTCTATTCAAGCCGGATCGTGTCTCAGCTCCTGGAATTTTTCAGCAGATCCCTGCGATTCTGCCTTTGGCAAGCTTTTCACCTGTGGCTTGAGATGCGATGGAGGGAGAGTCACAGAAGTGACTCTGGACGAGTCGGGATATAACGGTACTCTGCCGCCTGAAGTCGGCCAATTAAGCTCTCTGCAAATCTTGGACCTCTCCAGCAATGCCTTCCATGGCGCCATTCCATCCTCCATTGGAAATCTCACGTCCCTAGTCCGTCTCCTGCTCTCTCGGAATTCTTTCTCCGGCAACATCCCTGGTTCCCTCGCTGCTCTCTCAAATCTTGAACAGTTATCTCTCGATGACAACTTGCTGGATGGCCCCATTCCTGCAACATTCAGCAATCTGACAAGCCTTGTTCAGCTCGAATTAAACGGCAACAATCTCAGCGGCGAATTTCCTCTGCTAAGCGCCCTGGGGAAGCTGAAATTTCTGGATGTGAGCAATAATAGGTTCTCCGGCTCTCTTCCGGCAGCCCTGCCCCCTTCTCTGGTGGAGCTTGTCTTCAGAAACAATGGGCTAAGCGGCGAACTGGGGCTTAATCTGGCAGAGCTAGGCATGCTTCAAGTGGTAGACCTGAGCCATAATGAACTGACAGGACCTTTGCCGTCTGGATTTTTCGATCATCCGGCCCTGCAACAGCTGACCCTGTCTTACAACAGATTTACTTCATTGCAAGTTCCCGGTAGCTATGGCACAGACAGCCAGCTGATTGAGGTGGACTTAAGCTACAACAGAATACATGGCCCTCTGCCCGTATTCATGGCAACCATGCCCAGACTCTCTGCGCTCTCATTGCAGTACAATTACTTCACAGGAACAATCCCCCTCCAATATGCAAAGAGGGTTTCTGACAGTATCGCCGGCAAGGAGCCTCTGGTTCGATTGTTTCTTGCCGGAAATTTTCTGTTTGGAGAAATTCCGGCCCCGTTTTTGAATTTATCATCAAATGAAGTGAATGTAACATTTGGAGATAACTGCCTGCTGGACTGCCCGGAATCGTTTTTCTTCTGTCAGGGAGGCGATCAGAAGGCCATATCCACTTGCAGGGCTTTCACTCGTTTGCGACTCTGATAGCCAATGGATTTCAAGTCTGAGAAATCCGATATATCTCTTTATCCGAGCATTCTCTGGTTTTAAAAAATGTAACCCAGAATGATAAGTATTCCCACTTGCTCTCCTGTACAATCTTGAACTTCGTGTTGACCTGAGAGAAGTTTCAAATATTGTGTTATGCGTTTGAATCTTAATGGATGTGAGCTTGAATTTACTAATTTAAGCTTCAGATAGTACCTTTTCATTTCTGTATTTC

Fln Alignment:

sp_v1.1_unigene22708___QFLYSAQLGGARTVAGDVEALKALKDSVDANSIQAGSCLSSWNFSADPCDSAFGKLFTCGLRCDGGRVTEVTLDESGYNGTLPPEVGXXXXXXXXXXXXNAFHGAIPSSIGNLTSLVRLLLSRNSFSGNIPGSLAALSNLEQLSLDDNLLDGPIPATFSNLTSLVQLELNGNNLSGEFPLLSALGKLKFLDVSNNRFSGSLPAALPPSLVELVFRXXXXXXXXXXXXXXXXXXQVVDLSHNELTGPLPSGFFDHPALQQLTLSYNRFTSLQVPGSYGTDSQLIEVDLSYNRIHGPLPVFMATMPRLSALSLQYNYFTGTIPLQYAKRVSDSIAGKEPLVRLFLAGNFLFGEIPAPFLNLSSNEVNVTFGDNCLLDCPESFFFCQGGDQKAISTCRAFTRLR
A9NV54_______________QLLNSAQLGVARTVAGDVEALKAIKDSVDANSIKAGSCLGSWNFSVDPCDYAFGELFTCGLRCDGERVTEVTLDDSGYNGTLPPAIAQLSALQILDLTNNAFHGPIPHTIGNLTDLVRLLVSHNSFSGNIPASLSSLSNLQQLSLDDNSLEGPIPATFNNLTSLVRLELNGNNLSDRFPMLSALGKLNFLDVSDNQLSGPILAVVPPSLVQLSLRNNGLSGELRLNLAGMSMLQVLDLSHNKLSGPLPSGLFDHPALEQLTLSYNRFTSLQVPGSYGTDSQLIAVDLSYNRIHGPLPVFMATMPSLSALSLQYNYFTGIIPLQYAKRVSASLAGKEPLVRLFLAGNFLFGEIPTPFMNLSTQEVNVSFGDNCLLDCPKSLFFCQGGDQKAASTCRAFTRLR

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
432		90		10	0.90298
593	90		10		0.999898
595		10	90		0.999898
597		90		10	0.999898
599	10	90			0.999898
601	90	10			0.999898
604		90	10		0.999898
606	90			10	0.999898
612	10	90			0.999898
1483		35		65	1.0
1489	15	85			1.0
1541		64	35		1.0
1658		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
122	148	GTGAG GTGAG GTGAG GTGAG GTGAG GT	27

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain