SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22707

Length: 1785 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22707

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9S0Z5_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	pyruvate dehydrogenase e1 beta subunit	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	pollen tube development	GO:0048868	Biological Process	89%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	89%
Blast2go	catalytic activity	GO:0003824	Molecular Function	89%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	Transketolase-like, pyrimidine-binding domain	IPR005475	-	89%
Blast2go	Transketolase, C-terminal	IPR005476	-	89%
Blast2go	Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II	IPR009014	-	89%
Blast2go	Transketolase-like, C-terminal	IPR015941	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWM3

Fln msg:

Fln protein: MASSAMAQVFGGFTALMPSFSSSNRLQLGFSKHPPEWKRSSIMIRLDASFSQYSNSRKRASKLVTSAVAVKDETATSPATSRTGHELLLFEALREGLDEEMERDPRVCIMGEDVGHYGGSYKVSKGMAEKYGDLRVLDTPIAENSFTGMGVGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPVVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKEKIPDEEYVCCLEEAEMVRPGADITILTYSRMRYHVMQAAKTLVNKGYDPEIIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRAAIIENFWDYLDGPIMCLSSQDVPTPYAGTLEDWTVVQPPQIVSAVEQLCQ*

Protein Length: 409

Fln nts: ATGGGGACCCGATCTCACTCAACATAACCCATTTTGAAAAATCTAAGAAGTTAACGAAGGCGTCACAAACAATGTCATTATTGCATGTGGGACTTAAAACAAATACAAATGGCCAGTGGGGAGAAACACAGTAGGAAATCCATAGATACAGATATTATGTACAAAGGGTTTGCTTTGCTGTAACTACAGCTGCAATTGCCCCGTTACAAGGCGGTTGCATAAGTTCCCACTTCGAAATTTGTGAGTTTCACTCTGCAAAATTATCTCAA_-_ATGGCAAGCTCAGCCATGGCCCAAGTGTTTGGAGGGTTTACAGCCCTAATGCCTTCTTTTTCATCCTCTAACAGATTGCAGCTGGGCTTCTCCAAGCATCCACCAGAATGGAAGAGGAGTTCTATTATGATCCGATTGGATGCTTCGTTTTCTCAATATTCAAATTCAAGGAAACGAGCTTCGAAATTGGTTACCAGTGCTGTGGCGGTGAAGGATGAGACTGCTACAAGTCCTGCAACATCAAGGACTGGGCACGAGCTGCTCTTGTTTGAGGCTCTTCGTGAAGGTTTGGATGAGGAGATGGAGAGGGATCCTCGAGTTTGTATCATGGGGGAGGATGTTGGCCATTATGGAGGTTCTTACAAAGTAAGCAAGGGCATGGCTGAAAAATATGGTGATTTGAGGGTGCTCGATACACCCATAGCTGAAAATTCTTTCACAGGGATGGGTGTTGGTGCTGCCATGACAGGGTTAAGGCCTGTTATTGAAGGAATGAATATGGGTTTTCTGCTATTGGCATTCAATCAGATATCAAATAATTGCGGCATGCTTCATTACACTTCAGGTGGGCAGTTTACTATTCCCGTCGTTATTCGAGGCCCTGGTGGGGTGGGGAGACAGTTAGGTGCAGAGCATTCACAACGGCTAGAATCTTATTTTCAGTCTGTTCCTGGATTGCAGATGGTTGCTTGCTCCACTCCATACAATGCAAAAGGGCTGATGAAAGCAGCAATTAGAAGTGAGAATCCCGTTATCTTGTTTGAGCATGTTCTTCTTTACAACTTGAAAGAGAAGATACCAGATGAAGAATATGTGTGTTGTCTTGAAGAAGCAGAAATGGTGCGCCCAGGTGCAGATATAACCATTCTGACTTATTCTCGTATGAGATACCATGTGATGCAGGCAGCAAAGACTTTAGTGAATAAGGGATATGATCCAGAGATAATTGACATCCGCTCTTTGAAGCCATTTGACTTGCACACAATTGGGAATTCAATAAAGAAGACACATAGAGTGCTGATTGTTGAAGAGTGCATGCGTACTGGTGGCATTGGAGCGAGTCTCAGGGCTGCAATTATTGAAAACTTTTGGGACTACTTAGATGGACCCATCATGTGCTTATCTTCACAGGATGTTCCAACACCATATGCAGGCACACTAGAGGACTGGACAGTGGTGCAACCTCCTCAAATTGTATCAGCAGTTGAGCAGCTTTGTCAATAG___GCTTCGTTTTTCTTTGACCAATGCAAAAGCCTTTGATAAAGTTGCAGGCCCATTGAAATTTTGGGTTGGTTATTGTTTTTCATAAAATTCATTTACCTTGATCTCAACTTTGTTCCAAGTTAGTAGTGTTTACTTTAATTTGGTTCTAGAGTTTAGTAGTGTTTATTATATTTATTATTAGATATGAAAATTCATAGTTTCTTTAAAACTGTTGGATCAGTCGCCTTGTTATCCGCCTAAATATTCCGATAATACAAGATTTGACATTGCTCACATTGCTGTTATTCTAGCT

Fln Alignment:

sp_v1.1_unigene22707___MASSAMAQVFGGFTALMPSFSSSNRLQLGFSKHPPEWKRSSIMIRLDASFSQYSNSRKRASKLVTSAVAVKDETATSPATSRTGHELLLFEALREGLDEEMERDPRVCIMGEDVGHYGGSYKVSKGMAEKYGDLRVLDTPIAENSFTGMGVGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKEKIPDEEYVCCLEEAEMVRPGADITILTYSRMRYHVMQAAKTLVNKGYDPEIIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRAAIIENFWDYLDGPIMCLSSQDVPTPYAGTLEDWTVVQPPQIVSAVEQLCQ
A9NWM3_______________MASSAMAQGVGGITALMPSFSSSNRLQLGFSKHLPEWKRSSIAIRLDASFSQSSNSRKRASKLVTSAVVVKDETATSPATSKTGHELLLFEALREGLDEEMERDPRVCVVGEDVGHYGGSYKVTKGMAEKYGDLRVLDTPIAENSFTGMGVGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPVVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKEKIPDEEYVCCLEEAEMVRPGADVTILTYSRMRYHVMQAAKTLVNKGYDPEIIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRAAIIENFWDYLDAPIMCLSSQDVPTPYAGTLEDWTVVQPPQIVSAVEQICQ

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
511		14		85	0.993533
813		87		12	0.992554
840	14		85		0.993533
855		85		14	0.993533
858		85	14		0.993533
900	50		50		1.0
957	16			83	0.994512
1002	66			33	1.0
1005		16		83	0.994512
1026		83		16	0.994512
1068	42			57	1.0
1116		33		66	1.0
1119	85	14			0.993533
1179	40		60		1.0
1185		40		60	1.0
1296		77		22	1.0
1505		20		80	0.995493
1528			60	40	1.0
1532	40	60			1.0
1563			33	66	1.0
1594			60	40	1.0
1598		10		90	0.90298
1603	33			66	1.0
1610		66		33	1.0
1669		16		83	0.999991
1689		54		45	1.0
1717	10		90		0.90298
1765		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain