SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22706

Length: 1965 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22706
CGTCGTGACCTTGGCTGTCATCTCAACTTCACTCTCTTTTTCATCTGATACCTCTTACGCTCCGGACTCTGGAGGGATACCATTCATCTCTGTTTTAAGCTAAGATGGACACCTTTCTCTTCACATCAGAGTCTGTCAACGAGGGACACCCTGACAAGCTTTGTGATCAGGTTTCTGATGCCATCTTGGATGCTTGCTTGGAGCAAGATCCCGAAAGCAAGGTTGCATGCGAGACCTGTACAAAGACAAACATGGTAATGATCTTTGGAGAAATCACAACTAAAGCTAATATAGACTATGAGAAGATAGTGAGGGACACCTGTAGAGGAATTGGATTCGTATCAGCGGATGTTGGCTTGGATGCAGACAATTGCAAGGTCCTGGTGAACATTGAACAGCAAAGCCCTGACATTGCACAGGGTGTCCATGGCCATCTCACCAAGAAGCCTGAAGAGATTGGTGCAGGGGATCAGGGCCACATGTTCGGGTATGCTACAGATGAGACCCCGGAGTTGATGCCTCTCACTCATGTGCTAGCAACAAAGCTTGGAGCACGGCTGACTGAAGTAAGAAAGAATGGAACCTGCCCTTGGTTGAGACCAGATGGAAAGACCCAAGTTACTGTTGAGTATAAAAATGAGGGAGGGGCAATGGTCCCGTTAAGAGTTCACACTGTTCTCATCTCTACTCAACATGATGAAACTGTTACCAATGATCAGATTGCAGCTGATCTCAAGGAGCATGTCATTAAGCCGGTTGTTCCTTCTCAATATCTAGATGAAAATACAATATTTCATTTGAACCCATCTGGGCGTTTTGTAATTGGAGGGCCCCATGGCGATGCAGGACTCACTGGGAGGAAAATTATTATTGATACATATGGTGGTTGGGGTGCTCATGGTGGAGGAGCCTTTTCTGGAAAGGATCCCACCAAGGTGGATCGTAGTGGTGCCTACATTGTTAGGCAAGCTGCCAAGAGTGTTGTTGCTGCTGGGCTAGCACGCCGCTGCCTTGTGCAGGTTTCATATGCCATTGGTGTCCCTGAGCCACTTTCTGTGTTTGTTGACACATATGGAACTGGAAAAATTGCAGATACTGAAATCCTGCAGTTGATCAAGGAAAATTTCGACTTCCGCCCTGGCATGATTTCTATCAACCTTGACCTAAAACGGGGAGGCAATATGAGGTTCCAGAAAACAGCTGCATATGGCCATTTTGGTCGGGAGGATCCTGATTTCACTTGGGAGACTGTAAAGGTCCTGAAGTGGGAGAAAGCTTGAAACTGTGAGGTAAGACGCAGATGGATTTTTCCTTGAAAGCAGACCGAGTTTTTTGGGGTTCATTAGGGTTCACTATTTTCAAATTTTGTCAACAAACTATTGAATATGGCAACCTCGATTATGGGTTTCATATCTGATTCTTCGAATACCTGATTTAAGTGCCAGTGTTGTTCAAGTCTGGCTAGAGGTATGATTTTTATCATATTTTGATCCATTTTAGATAGTATCTTGATATTTATCAGAAGTGCAATATGTAGAACCAGTTCCGGATTTTGTTTCCCAACGGAAGTTATTGGGATTTAGCTGTGATGGGGCATTGCAATTGAATCTTGCCCTTTTTACATTCCACAATATTTTTTTTATGATTCGGCATATTTTGTGACAACAATTTTTGGTCTCATCTGAAAATTTTCTTGTTCCAAGGGGTTTAATAAAAGTGAAAGCCTGAAATATACATGCAAATAGATAAGAAGCAGCTACATTGGGATAGTAGCACTTTTGATAACGAAAAATCTATTAAATTATACCTTTTCATTCCATTTCGAACTGTTACATTTAGTGTATGAAACAGCTGTATAAACAGCCTCTTATATAACTGCAAATGACTAATAAAGACTTGTATAATTATTCCATTCGACCAATAATTGATTGTTTCTAAGGTCTTTTGTTTTTCCTAAGTGTTATA

Ace file of the UniGene sp_v1.1_unigene22706

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine synthase 5 n=6 Tax=Embryophyta RepID=METK5_VITVI	-	-	87%
FL-Next	sp=S-adenosylmethionine synthase 1; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	s-adenosylmethionine synthetase	-	-	96%

Source	InterPros	Term	Type	Identity
Blast2go	S-adenosylmethionine synthetase	IPR002133	-	96%
Blast2go	S-adenosylmethionine synthetase, N-terminal	IPR022628	-	96%
Blast2go	S-adenosylmethionine synthetase, central domain	IPR022629	-	96%
Blast2go	S-adenosylmethionine synthetase, C-terminal	IPR022630	-	96%
Blast2go	S-adenosylmethionine synthetase, conserved site	IPR022631	-	96%
Blast2go	S-adenosylmethionine synthetase superfamily	IPR022636	-	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUH8

Fln msg:

Fln protein: MDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMIFGEITTKANIDYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEGGAMVPLRVHTVLISTQHDETVTNDQIAADLKEHVIKPVVPSQYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKIADTEILQLIKENFDFRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEKA*

Protein Length: 393

Fln nts: CGTCGTGACCTTGGCTGTCATCTCAACTTCACTCTCTTTTTCATCTGATACCTCTTACGCTCCGGACTCTGGAGGGATACCATTCATCTCTGTTTTAAGCTAAG_-_ATGGACACCTTTCTCTTCACATCAGAGTCTGTCAACGAGGGACACCCTGACAAGCTTTGTGATCAGGTTTCTGATGCCATCTTGGATGCTTGCTTGGAGCAAGATCCCGAAAGCAAGGTTGCATGCGAGACCTGTACAAAGACAAACATGGTAATGATCTTTGGAGAAATCACAACTAAAGCTAATATAGACTATGAGAAGATAGTGAGGGACACCTGTAGAGGAATTGGATTCGTATCAGCGGATGTTGGCTTGGATGCAGACAATTGCAAGGTCCTGGTGAACATTGAACAGCAAAGCCCTGACATTGCACAGGGTGTCCATGGCCATCTCACCAAGAAGCCTGAAGAGATTGGTGCAGGGGATCAGGGCCACATGTTCGGGTATGCTACAGATGAGACCCCGGAGTTGATGCCTCTCACTCATGTGCTAGCAACAAAGCTTGGAGCACGGCTGACTGAAGTAAGAAAGAATGGAACCTGCCCTTGGTTGAGACCAGATGGAAAGACCCAAGTTACTGTTGAGTATAAAAATGAGGGAGGGGCAATGGTCCCGTTAAGAGTTCACACTGTTCTCATCTCTACTCAACATGATGAAACTGTTACCAATGATCAGATTGCAGCTGATCTCAAGGAGCATGTCATTAAGCCGGTTGTTCCTTCTCAATATCTAGATGAAAATACAATATTTCATTTGAACCCATCTGGGCGTTTTGTAATTGGAGGGCCCCATGGCGATGCAGGACTCACTGGGAGGAAAATTATTATTGATACATATGGTGGTTGGGGTGCTCATGGTGGAGGAGCCTTTTCTGGAAAGGATCCCACCAAGGTGGATCGTAGTGGTGCCTACATTGTTAGGCAAGCTGCCAAGAGTGTTGTTGCTGCTGGGCTAGCACGCCGCTGCCTTGTGCAGGTTTCATATGCCATTGGTGTCCCTGAGCCACTTTCTGTGTTTGTTGACACATATGGAACTGGAAAAATTGCAGATACTGAAATCCTGCAGTTGATCAAGGAAAATTTCGACTTCCGCCCTGGCATGATTTCTATCAACCTTGACCTAAAACGGGGAGGCAATATGAGGTTCCAGAAAACAGCTGCATATGGCCATTTTGGTCGGGAGGATCCTGATTTCACTTGGGAGACTGTAAAGGTCCTGAAGTGGGAGAAAGCTTGA___AACTGTGAGGTAAGACGCAGATGGATTTTTCCTTGAAAGCAGACCGAGTTTTTTGGGGTTCATTAGGGTTCACTATTTTCAAATTTTGTCAACAAACTATTGAATATGGCAACCTCGATTATGGGTTTCATATCTGATTCTTCGAATACCTGATTTAAGTGCCAGTGTTGTTCAAGTCTGGCTAGAGGTATGATTTTTATCATATTTTGATCCATTTTAGATAGTATCTTGATATTTATCAGAAGTGCAATATGTAGAACCAGTTCCGGATTTTGTTTCCCAACGGAAGTTATTGGGATTTAGCTGTGATGGGGCATTGCAATTGAATCTTGCCCTTTTTACATTCCACAATATTTTTTTTATGATTCGGCATATTTTGTGACAACAATTTTTGGTCTCATCTGAAAATTTTCTTGTTCCAAGGGGTTTAATAAAAGTGAAAGCCTGAAATATACATGCAAATAGATAAGAAGCAGCTACATTGGGATAGTAGCACTTTTGATAACGAAAAATCTATTAAATTATACCTTTTCATTCCATTTCGAACTGTTACATTTAGTGTATGAAACAGCTGTATAAACAGCCTCTTATATAACTGCAAATGACTAATAAAGACTTGTATAATTATTCCATTCGACCAATAATTGATTGTTTCTAAGGTCTTTTGTTTTTCCTAAGTGTTATA

Fln Alignment:

sp_v1.1_unigene22706___MDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMIFGEITTKANIDYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEGGAMVPLRVHTVLISTQHDETVTNDQIAADLKEHVIKPVVPSQYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSVVAAGLARRCLVQVSYAIGVPEPLSVFVDTY--GTGKIADTEILQLIKENFDFRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEKA
A9NUH8_______________MDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMIFGEITTKANIDYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKDGTCPWLRPDGKTQVTVEYKNEGGAMVPLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVVPSQYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCLVQVSYAIGVPEPLSVFVDTYGTGTGKIQDAEILKLIKENFDFRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEKA

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
380		83	16		0.994512
388	83		16		0.994512
437		20		80	0.995493
747	66		33		1.0
1192	87	12			0.992554
1194	87			12	0.992554
1195	87	12			0.992554
1196	87		12		0.992554
1197	87			12	0.992554
1198		87	12		0.992554
1200		12	87		0.992554
1204		87	12		0.992554
1205	87	12			0.992554
1207	87		12		0.992554
1209		12	87		0.992554
1210	12		87		0.992554
1216		12		87	0.992554
1218		11	88		0.923564
1223			88	11	0.923564
1226		11	88		0.923564
1227		11	88		0.923564
1228	88			11	0.923564
1230		88	11		0.923564
1234	88	11			0.923564
1235	11			88	0.923564
1236		11		88	0.923564
1261		12		87	0.992554
1329	16	16		66	0.988813
1330			20	80	0.995493
1377		80		20	0.995493
1494	75			25	0.996473
1500			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain