SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22704

Length: 1906 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22704

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	X8 multi-domain protein	-	-	3.0e-37	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	hydrolyzing o-glycosyl	-	-	1.95436e-28	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	X8	IPR012946	-	1.95436e-28	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZF3

Fln msg: your sequence is longer than subject: 351 - 212

Fln protein: MAPDLKLVFVLLLLSAMYCSGSLDVNGKSMDELSSSQGQLRLGLRKVLEKKATTVTNSDEVRPSELGNITPSTTPHSRYTYPITTPTPPAIITTPTPVITPPTTPTTTPILNPPTAPVTTTPTTPTTTTPAVSGTQSWCVARTNVPENSLQVALDYACGIGGADCKAVQQAGQCYQPITVAAHASYAFNSYYQKNNKAPGTCDFGGNAIITTTNPSYGSCIYASGSSTISTPPPATIITAPPPPATVGISAAPPPPATIGIVAAPPPPFGTTPTTTTPGYNVSTPTGGITSPTGGGITSPTVGGITGGLGPSASTYNTTPTYGSAPSFFQDLPSSFILFLLSLVVAVILG*

Protein Length: 352

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGGTTAGCAAAATAATAAGCTCTATTGCCTTCTAAAAGAATTATAATTGAATTTGTCTACATATATTTATCCAGCGTTGCGTGCGTGACCTTGGCTGGTTCTTCATAGGTTGCTTAATGCCATTCTTATCCCACAAGTTTATGTGAAAAATTCACAGGTAGATTGATTCTCTCTTTCTTTCCTGACCCTTTTCTGGATTCCCTGTCCTTATGAAACCCAATTAAAGAGGCAACTAAACAGAGTGCTGGGCCTCACTTGGACTTCTTGTGTTAAATGGGTTTTTCCTGGCACTTGGATTCATCATTTCTGAGTTGAGCGTGGAGCAGAGAAGGTGGGTCTGGCTGGTTTCAGCACAACCTGAAACAAAGTCAGGTGAACTAGGCTTGTGGTGGAAGCTTGAAGCTCAGCCCAGCTCAGGTGGAGCCTCAGGAGTTTGTGTATATTGGTTGAGGTGATTTGTTCATTCAGGGAGATTGCTCTATCA_-_ATGGCTCCAGATTTGAAACTCGTGTTTGTGCTGTTGCTACTATCTGCTATGTATTGTTCAGGATCTCTGGATGTAAATGGGAAGAGTATGGACGAGCTGAGTAGTAGTCAAGGACAGTTGCGATTAGGTTTGAGAAAGGTTTTAGAAAAGAAAGCTACTACTGTAACCAATAGCGATGAGGTTCGCCCTTCTGAATTAGGGAACATCACACCCAGCACAACACCTCATTCTCGTTATACTTACCCCATCACAACGCCCACTCCCCCCGCGATCATAACAACACCAACGCCTGTTATAACACCACCTACAACTCCCACAACTACACCTATCCTCAATCCCCCTACAGCCCCTGTAACTACCACTCCTACAACCCCCACAACCACCACCCCTGCTGTATCAGGGACTCAGAGCTGGTGCGTGGCCAGGACCAATGTTCCAGAAAATTCCTTGCAGGTCGCTCTTGATTACGCCTGTGGTATCGGAGGTGCAGACTGTAAAGCTGTACAACAAGCAGGGCAATGCTATCAGCCAATAACAGTTGCAGCCCACGCTTCCTACGCATTCAACAGTTACTACCAGAAGAATAATAAGGCACCCGGGACCTGTGACTTCGGCGGCAATGCAATCATTACCACAACCAATCCGAGCTATGGGAGCTGCATATACGCTTCAGGGTCGAGCACTATCAGCACTCCGCCTCCTGCAACAATTATTACTGCACCACCTCCTCCAGCCACGGTTGGTATTAGTGCTGCTCCACCTCCTCCAGCCACGATTGGTATTGTTGCTGCTCCACCTCCTCCATTTGGCACCACTCCAACTACTACCACTCCAGGGTACAATGTCAGCACTCCAACCGGGGGTATTACTTCTCCTACTGGTGGTGGTATTACCAGTCCCACAGTGGGGGGCATTACTGGAGGCCTGGGACCAAGTGCGTCTACATACAATACTACGCCCACATATGGCAGCGCACCATCATTCTTCCAGGATCTGCCTTCGTCATTTATATTATTCCTCTTGTCTTTAGTTGTGGCTGTAATACTAGGCTAA___GTACTTCAAATGCTAGCTCTGTCTGTTTACTAGTGCCATAGCTAGCATGCCAAGCGATGAGAATGATGTTGTAGAAATGCTCATCTTTAGTAGCTCCTACAAGCTATTTGCTTTTGTTAAGAGGCCTCAGGTGAAAATTTGGTTGGGAGATTTTTGGAGATGGGCATAGAAGTGCAGGTCAACCCTTTATTCTTTGCAAGAGATGCATGAGTAAGGGGGGCATATTGTTCCCAAATTTTCATATGTACATTGAATGCTTTGCAAGAGCTGGTACATTCCTTGCCCACTCGCATTTGCTATCTCTTCAACAAATAATACTATCTTCATCCATGCTGTGTTCTCT

Fln Alignment:

sp_v1.1_unigene22704___SGTQSWCVARTNVPENSLQVALDYACGIGGADCKAVQQAGQCYQPITVAAHASYAFNSYYQKNNKAPGTCDFGGNAIITTTNPSYGSCIY
A9NZF3_______________SAGTTWCVAKNNVGDSTLQVALDYACGLGGADCTAIQQGGVCFDPDNVQAHASYAFNSYYVKNGMLPGTCDFAGSAAPTTNNPSFGKCMF

SNPs (tot: 73)

Position	A %	C %	G %	T %	Probability
107			60	40	1.0
111			60	40	1.0
113			60	40	1.0
114	60			40	1.0
115		60		40	1.0
118		40		60	1.0
119	40		60		1.0
126	40			60	1.0
129		40		60	1.0
130	40	60			1.0
168		14		85	0.993533
172	85			14	0.993533
173	85		14		0.993533
175	85	14			0.993533
176	85	14			0.993533
179		85	14		0.993533
180	85		14		0.993533
183			85	14	0.993533
187		14	85		0.993533
189		14		85	0.993533
191		14	85		0.993533
292		14		85	0.993533
297			14	85	0.993533
299	85	14			0.993533
300	85	14			0.993533
302			85	14	0.993533
305		14		85	0.993533
307			14	85	0.993533
309		14		85	0.993533
310	14	85			0.993533
591		2		97	0.967822
604	2		97		0.971188
774	10			90	0.90298
776		90	10		0.90298
780		88	11		0.923564
781		11	88		0.923564
841	50		50		1.0
894	33	66			1.0
1136		80	20		0.995493
1137	75		25		0.996473
1179		75		25	0.996473
1247	25	75			0.996473
1258	25		75		0.996473
1338	16			83	0.994512
1399		13	86		0.999973
1402	86		13		0.999973
1404			13	86	0.999973
1408	86			13	0.999973
1410			13	86	0.999973
1412		86		13	0.999973
1413		86	13		0.999973
1414	86			13	0.999973
1417		13	80		0.999961
1421		13	86		0.999973
1422	13		86		0.999973
1479		14		85	0.999981
1512			11	88	0.999937
1517		88	11		0.999937
1519		11	5	83	0.999887
1520		11		88	0.999937
1522	88			11	0.999937
1523			11	88	0.999937
1524	83	5	11		0.999887
1525	5	11		83	0.999887
1527	88		11		0.999937
1529		11		88	0.999937
1530	11	88			0.999937
1651		89		10	0.999919
1652		10		89	0.999919
1655	89			10	0.999919
1656	10		89		0.999919
1658	88		11		0.999937
1717			33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain