SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22690

Length: 1612 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22690

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycolipid transfer protein, putative	-	-	72%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	72%
Blast2go	pleckstrin homology domain family a	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycolipid transfer protein domain	IPR014830	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9HSG5

Fln msg:

Fln protein: MEGTIFTPCLEAIPQVKSADGDIQTKPFLDACKLVLPVIDKFGAAMALVKSDVGGNISRLDTKYEQDPSVNRLIYDIVRKEIEEKTAKGSSSCTNALLWLTRAMDFLVELFRNLLEHPDWTMTQACTDSYTKTLKKWHGWIASTSFNVAMKLAPERKKFMEVIGGTGDITSDMEKFCASFPELLQENHKFLQSVGLDNLKAS*

Protein Length: 204

Fln nts: CGTCGTGACCTTGGCTGTTGGTGGGCCCGTAGATTTCCATGTGTAATATCGCATTAATTCAAACGCATTGATTTGTTTGAATTACCATTTTTCTTCTGGCAATTTGCTGAGCTGGGTTTTTAGATCTCGAGAATTGGCTCGACTTGTTCCCTTCTTTTCGTCTGTTGGCTTTAAATTCTTGAAACTTGGCCTTAGTCAGGGTGGTTGGTGTTTATGTTAAGGTCTAAGTGCAGTGTGAAGATCAGAAGTGTTTTTCTGCCCGCGTCAAACAATTGACGTGACTAGGAATTTGGCAAAGGGTAGGTGTTTTGAC_-_ATGGAGGGGACTATTTTTACTCCTTGTTTGGAGGCCATACCTCAGGTGAAGTCCGCCGATGGTGATATACAGACGAAGCCATTCTTGGATGCCTGCAAGCTTGTGTTGCCAGTCATTGACAAGTTTGGCGCTGCTATGGCACTTGTGAAATCTGATGTTGGTGGCAACATTTCGAGATTGGATACTAAATATGAACAGGATCCTTCCGTGAACCGTTTGATATATGATATTGTGCGTAAGGAGATTGAAGAAAAAACGGCTAAGGGTTCTTCTAGTTGCACAAATGCTCTGCTGTGGTTGACAAGGGCTATGGACTTTTTGGTCGAATTGTTTCGCAACTTACTTGAGCATCCAGATTGGACAATGACACAAGCATGTACAGATTCTTATACCAAGACTCTGAAGAAGTGGCATGGGTGGATTGCAAGCACAAGTTTCAATGTGGCCATGAAACTTGCTCCTGAAAGGAAAAAATTTATGGAAGTAATTGGAGGGACTGGTGACATCACATCAGACATGGAAAAGTTTTGTGCATCATTCCCAGAACTTCTTCAAGAAAACCACAAGTTCCTGCAAAGCGTTGGCTTGGATAATCTAAAAGCTTCTTGA___GGAGTTATTCTCTGCTGTTGGTTTTCTTCAACCCAACTTGACATTTCATGGAGTTACATATCTTCTTGCTGAATATAGGACTATTGAGGAGAACTTGAATAAGCAATGCCCACAAAGAAGTGTCTACAGGTTGGAACAGCCAGCATTTTCTGTTTGTCATTCATACTTAAGTCCTCTTGGGTTGGAGGATTTGAGGAAGGTAGAGATGTATAGCCAAGGGGTTTTTTAGCTTGTCAAGAGCTATGGATTTACCTCTCTTATCTGTGATGGAGTACTTTCTAAATAACCATATAATATTATAAGTCTGAAATTCTGTGAATCTTGCAAGAGACCAGAATACTTATGTTGATGGTTAATTTAGGGATATCTTTTTATTTTAAGCATACATGATGCTTATTTGATATTATTTTAATGCATGGTGTTTTCGTGTTGTTTGTGCAACTGGAATTTTAAAGGATAGTAAGATGCTATCTTAGAAACAATTAGATGTGTTTTTAACTTTGTTGCGGCTAACATTTGTTGTGGTGTAAACTGTAATCAAACCAAGGACCACAGGTGTGATGTGAATTCAAACATATATATACTGTATAGTTCTAGTAGTCCATCCTTCAGTCTGGACTTGTGACTGCTGTTCAGAGTGTAAACTTTTTTGAATTGGCTATCAATATCAGGTTAATTGGATGCCCTAAC

Fln Alignment:

sp_v1.1_unigene22690___EGTIFTPCLEAIPQVKSADGDIQTKPFLDACKLVLPVIDKFGAAMALVKSDVGGNISRLDTKYEQDPSVNRLIYDIVRKEIEEKTAKGSSSCTNALLWLTRAMDFLVELFRNLLEHPDWTMTQACTDSYTKTLKKWHGWIASTSFNVAMKLAPERKKFMEVIGGTGDITSDMEKFCASFPELLQENHKFLQSVGLDNLKAS
B9HSG5_______________QGTVFAPSLEGMKHVRSDNGEILTKPFLDVCKLILPVIDKFGAAMALVKSDIGGNITRLETKYLSDPSKYNQFYTMVQEEADAKTAKGSSSCANGLLWLTRAMDFLVELFRNLLTHPDWTMSQACTDSYGKTLKKFHGWLASSSFTIAMKLAPDRKKFMEVIAGTGDVAADMEEFCTTFPPFLEENHKFLASVGLDDMKAS

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
87	66		33		0.997452
90			33	66	0.997452
91	33			66	0.997452
92		33		66	0.997452
99			66	33	0.997452
102	66	33			0.997452
104		33		66	0.997452
105	33			66	0.997452
192			20	80	0.995493
194	80	20			0.995493
198		80	20		0.995493
200		20	80		0.995493
201		20	80		0.995493
202			80	20	0.995493
206		20		80	0.995493
209		20	80		0.995493
210	20			80	0.995493
211		20	80		0.995493
213		20		80	0.995493
214	20			80	0.995493
538			2	97	0.980996
576		4		95	0.99692
966	66	33			0.997452
1034	80	20			0.995493
1036	20			80	0.995493
1083	87		12		0.992554
1085	12			87	0.992554
1087	87	12			0.992554
1089	75	12	12		0.975346
1093	85	14			0.993533
1095		14	85		0.993533
1098	14	85			0.993533
1226	60			6	1.0
1444		42	57		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain