SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22653

Length: 1632 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22653

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LEA_2 domain containing protein	-	-	3.0e-07	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	protein	-	-	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Late embryogenesis abundant protein, LEA-14	IPR004864	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPF0

Fln msg:

Fln protein: MAPVSTARSIPVPSQEPYAYGYPADAYYVVLPPAPHLNNRRRNRRLLAYAAALAISLGLFLGAAFYFFWPSQPGIQVISVNFNDISFETASQSGSIVPRLFMNISMDMRVKVSNKDYFSLEYDKLDIGLGYRGRRIGVVESEGGRLPARHTSYVNSTLELDGIEIMHDIVYLLEDLVRKELPLDTVVGFNGSVYVLFAKIPLKKVVSCEVVVNPDNQTILSQDCGLVI*

Protein Length: 230

Fln nts: ATGGGCCTGCAAGGGACCGGGACCTCGATAACGGTGAGGCCTTCACAGCTCTTCAGAGCTTCGTGCCGCACTTCGCCTGGTGACAGAGTTAGCTGCTTGACCTGACAAATTCGAAATTAAGAGTTGGTCTTTAATTTCTGATATCCGAATGGTAGGTCAGGCAGTTTGTTACCTTTCCCTGTTCGCCATGAACAGAATAATTAGGGGCCCCAGGAGTACTCCTATAAGCCGAAGTCTTCACTGCTGCAGGAATGCTTGCGACGGTTTTTAAAAAGCACGACAAGA_-_ATGGCGCCTGTAAGCACCGCGCGATCGATTCCTGTGCCCTCCCAAGAACCTTACGCCTACGGCTATCCTGCAGACGCATACTATGTGGTTCTTCCTCCGGCTCCACATCTTAATAATAGGCGGCGTAACCGTCGGTTACTTGCTTACGCCGCTGCTCTGGCGATCTCTCTCGGCCTCTTCCTCGGCGCGGCTTTCTACTTCTTTTGGCCGTCCCAGCCGGGCATTCAAGTCATCAGCGTGAACTTCAATGATATTAGTTTCGAGACGGCCTCTCAATCTGGCTCCATTGTACCCCGTCTGTTCATGAATATAAGCATGGACATGCGTGTGAAGGTCAGCAATAAGGATTATTTCAGCCTGGAGTATGATAAGCTGGATATAGGGTTAGGGTATCGGGGGCGAAGAATTGGGGTCGTCGAGTCAGAAGGCGGCCGTTTGCCCGCTCGGCATACTTCCTATGTGAATTCCACACTTGAGCTAGATGGAATCGAAATAATGCATGACATTGTGTATCTTTTGGAAGATCTTGTCCGCAAGGAGCTTCCCTTGGACACTGTTGTGGGATTTAATGGCTCGGTTTACGTTTTATTCGCTAAGATTCCGCTAAAGAAAGTCGTGTCCTGTGAAGTAGTTGTGAATCCAGACAATCAAACTATTCTTAGCCAGGATTGTGGTCTTGTGATATGA___TCTTAACTGTATTCTTAGCTGTATGCAAGGTTGTCCACTATGAGTAATTACTGGAGGTGAATGTGTTACAACAATGTATCTGAATGCAGGTCTGTTGAATATGAGTTACCATTCAAGATGAGGAGGAAAATTTGTCAAAGACCTGATATTTTACTTTGTACTATTTGTTTCCTTACCATATTGAAACAAATACAGTGCAGTTTTATATACTGTCCAGATTATTTGCTGCTGTAAGATATGTAACTTTTGAGTACTTGATGCAAATCTGTGGACTGAGAATGAGATCCGTAGGAACCATATAAAGCAACATTGTGGTTATGTTGAAATTGCTGTTCTTCAGTATATCGTTGACAATTTGGCTGTCTATATCATGCCATCTTCACCAAATTGTCAATCTTTAAAGCACTTAAAAGTTCCATGATAGAAATCCTGGTTCTCAATTGATTGCAATCACTGTTGGCAGCAACCTGCGACTTACAGCATATGATTTTGCATAGATTGGTTGTAGTTTAAAAGATCCATGAAAGTACATTTAGCTTTCATCTTTTCTCCGAATCCTCAATGTTGAAAGCAATAAGAAGTTCCATTTAAGAAGTATTGGTCGTCAACTTATTGCAATCACCAACAGTAGCAATCCATGACCTTTAGCAGGTCATATTC

Fln Alignment:

sp_v1.1_unigene22653___MAPVSTARSIPVPSQEXXXXXXXXXXXXVVXXXXXXXXXXXXXXXXXXXXXXXXISXXXXXXXXXXXXWPSQPGIQVISVNFNDISFETASQSGSIVPRLFMNISMDMRVKVSNKDYFSLEYDKLDIGLGYRGRRIGVVESEGGRLPARHTSYVNSTLELDGIEIMHDIVYLLEDLVRKELPLDTVVGFNGSVYVLFAKIPLKKVVSCEVVVNPDNQTILSQDCGLV
A9NPF0_______________MAPASTSRSNPVPFQEPYSYGYPANAYYVVLPPAPHLHSRRRSRRLLAYAAALVVSLGLFLGAAFYIFWPTQPVIQVIGVNFNTINFQAAPQPGSVVPRLFMNISMDMALKVNNKDYFSLEYDSLDVGLGYRGRRIGVVESEGGRLPARHTAYVNSTLELDGVEIFHDTVYLLEDLVRKELPLDTVAEFNGSVRVLLVKVPLKKVVSCEVVVNPDNQTILSQDCGLV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
556		78		21	1.0
612		78	21		1.0
613		21	78		1.0
1309		88		11	1.0
1333	13		86		1.0
1338		93		6	0.989189
1352		86		13	1.0
1372		15		84	1.0
1526		50		50	1.0
1528	50			50	1.0
1531	12	87			0.993502
1541	42		57		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain