SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22641

Length: 2704 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22641
ATGGGACGCCAAAGGTGGTCCCTTCTTCATTTGTAATTTGAATTTTGAAATTTCATCGGAGTTGAGTGAATCTATACGACTGGTCATCTAGTTAGGGTTTGCGGAATATATCGACAACGGTTAAATATCTCGATTGAGGGGGCAGCCGAAAGGAAGAAACGGTGGAGATTCAGGAATTCATCCAGGCAGGCAGCAAGCAAGCCGTATGTTTGTGGACTCGAGTCCAAGCTATTGATTTTCTTCCTTCATTCTCTGTGGGATAATGGAAGAAGCGGCCGAAGAGAACGATAAGGTCAGAGTAGGGTTTGCGAAGCACTTGGCCTCCTGCAACAAGAAGACGCGCGACACAGCAGTCGAGCTTCTCAGGAGATGGCTCGAAGCCCAGACCCACGTTTCAGATCTCGACTTCAAGAAGATCTGGAAGGGTCTCTTCTACTGCGTTTGGCACGCCGACAAGCACGAAGTACAGGCCCAGCTCATCGACAAACTCGCTTCTCTGATTCGAACACTCGACCTTGCCCTCGCTCGGCACTACTTCCAGGTATTTCTCTTAACCATGGTACGCGAATGGAGTGGAATTGATCATCTGCGACTAGACAAATTCTATCTCATGCTCAGCCGATTTCTTCATCATCTTTTTCTCCTTTTAGATGACCATGGGTGGGACTCTGAGTTGACAAAAGGATTCATGGCGGATTTGAGGGACGGATCCCTTTTGGCCGAAGATAAGTACTCTGCAAAGGGGGTTAATCTTCACTTTGTTGATGTTTATCTCAATGAGCTTGCTGATTTTCTACCCCTTGGGATAGAAACTTTTGGTCTGGTATTTGAGCCCCTTTATTCTGTTCTGGCCAAGTCTCCTGATAAGCTTTTGGTCAGCAGAGTAAGGCTCAATGTGTTTGATTGCCTTTTGGAAAATGGGAAGAAACTTATTAAGCGCAGACAAGAGCAACGACAAGGTGATGACGTTGTTGTTGATGATAATGATAAAGTGGAGAAGTTGGGACTCATTGCGGTTACAATGGGCATTGCGAACGGGCTCTTTGAGTTGGCTACCGCAGATTCGACTCTGCAGGCCAACAGGAAAGTTATCTATTCTTTGTACGAGGATTTCGGCAAGCTGGAGAAGTATTTCTCGACTTCTGGCATATCAATTTTCCCAAATGGGGTGAAGAAGAGGAAGCTATCTGCAGAGGAGTCTTCAGTTGCAGTGGATGACGCGAATCAGCAGGTAGATGATAAAATGGAGATTGTTGAAGAAGTCAGAGTGGACCAGTTAGGGAAGAAGATAAAAGAGATAGAGAATTTGGACGCTATCGAAGAAGGCAGCCTGGATAAATTAGGTAAGAAGATAAAAGAAGTTAAGAAGAGCAAATTAGAGAAAGTCAAAGGGAAGGGCAAATCCAAGAAGGCTAAAAACCTTGCAGCTAGTGAAGATGGGACCTCCGCAAAAAAGAAGGCGGCTAAAAAGTTTGTGTCAAGTGAAGATGGGACCTCTGCAATAAAGAAGAAGATTAAGACGCTTGCATCTAGTGAAGATGGCACCTCTGCAATAAAGAAGAAGGCTAAAAAGCTTGCATCCAATGAAGACGGAACCTCTGCGATGAAGTCTAAAATAAAGGGTAGCTCGGAGCTTCGTAAAAGNAAATCTTGTGTTAAAGAGCAAAAGAGCGGAACGGGTGAAGCAATGATTGATCCTGTAGGCAACACAGATGATGGTGTGAATAATGATCAAAGCATGCCATCTTTAGATAATAATTCTCAAGATTTCATGGGGTTTGGCGATTCCGTGATCTCAAATCTTCAAAAGGAGTTTGAGAAAGTTGCCGCAGAACTAGGGGATGGTATTGATCAGTATGGTTCGCCTGTTATGTCTTTGGCAGCTCCGGTATCTCCTTCAGACGTAGGGTCAAAAAAGAGGAAAAGGGTAAAAAGTGTAGAAAACAAGGTTGCTAGAAGTCCAAGTTTATCAACTGGCCCTAGCACTTTCAGTAATTGTGGTAAGAGTGGTGAGAAAAGTGTGAAGAAGGTTAGATTTTCTATGAAAAGTAATCTTGTCTGGAAGCCTCACAGCCCACTGCCCCCCCAGAGCTTAAGGGTACCCCCGTCTGCCACTCCAAGAGGCAGTGCACTGAAGAAGGGAGTACCTCCAGGTCCAATCCGCATCATGAAAGAATCACCTAGTCCCAAAAGAATCAGGCGGAAGGCTCTTTCTGCTCGGAAGAGCCAGAAAATCTTGAAAAGCAATTTGCCAAACGCCAAGCTGATTCGCAAACGGCGGTCGAGTGTTTTGTAACAAATGCAGCAAAATTTCTACACAGTTGCAACATCATGGAGCCATGTGAATATGGCGACACTGTCTGGGTTCTTAGCCATTTTTTGTGTAAGAAAGTGATATTACTGTTGTCAAAACCTAGTTATCAGTCTCTTTATGATAATTCCATTAGCTTTTGCTTTCAGCACAGATGTTTACATTAAAAGAATTGACAGTGGATAGGTGAAAGAAGGCTTTTATGAAATGCTATTTTTTGGTCAGAACTAAAAAGCGACAACAATAGCTGTCTAAACTGAAATTTGGTATGTATTTTTGGATCTTGCATTGATTCTTCTTCAATTAAGTCAAGTAAACATGCCAAGATTATAAGCTGATTCCTGCAAAAAAATAATTCATCAACAATAGAATTTACTTGCTTTTACAAAGAAT

Ace file of the UniGene sp_v1.1_unigene22641

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleolar protein,Nop52 containing protein	-	-	2.0e-37	33%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	47%
Blast2go	protein	-	-	0.0	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nucleolar, Nop52	IPR010301	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6GXI5

Fln msg: your sequence is longer than subject: 678 - 547

Fln protein: MEEAAEENDKVRVGFAKHLASCNKKTRDTAVELLRRWLEAQTHVSDLDFKKIWKGLFYCVWHADKHEVQAQLIDKLASLIRTLDLALARHYFQVFLLTMVREWSGIDHLRLDKFYLMLSRFLHHLFLLLDDHGWDSELTKGFMADLRDGSLLAEDKYSAKGVNLHFVDVYLNELADFLPLGIETFGLVFEPLYSVLAKSPDKLLVSRVRLNVFDCLLENGKKLIKRRQEQRQGDDVVVDDNDKVEKLGLIAVTMGIANGLFELATADSTLQANRKVIYSLYEDFGKLEKYFSTSGISIFPNGVKKRKLSAEESSVAVDDANQQVDDKMEIVEEVRVDQLGKKIKEIENLDAIEEGSLDKLGKKIKEVKKSKLEKVKGKGKSKKAKNLAASEDGTSAKKKAAKKFVSSEDGTSAIKKKIKTLASSEDGTSAIKKKAKKLASNEDGTSAMKSKIKGSSELRKRKSCVKEQKSGTGEAMIDPVGNTDDGVNNDQSMPSLDNNSQDFMGFGDSVISNLQKEFEKVAAELGDGIDQYGSPVMSLAAPVSPSDVGSKKRKRVKSVENKVARSPSLSTGPSTFSNCGKSGEKSVKKVRFSMKSNLVWKPHSPLPPQSLRVPPSATPRGSALKKGVPPGPIRIMKESPSPKRIRRKALSARKSQKILKSNLPNAKLIRKRRSSVL*

Protein Length: 679

Fln nts: ATGGGACGCCAAAGGTGGTCCCTTCTTCATTTGTAATTTGAATTTTGAAATTTCATCGGAGTTGAGTGAATCTATACGACTGGTCATCTAGTTAGGGTTTGCGGAATATATCGACAACGGTTAAATATCTCGATTGAGGGGGCAGCCGAAAGGAAGAAACGGTGGAGATTCAGGAATTCATCCAGGCAGGCAGCAAGCAAGCCGTATGTTTGTGGACTCGAGTCCAAGCTATTGATTTTCTTCCTTCATTCTCTGTGGGATA_-_ATGGAAGAAGCGGCCGAAGAGAACGATAAGGTCAGAGTAGGGTTTGCGAAGCACTTGGCCTCCTGCAACAAGAAGACGCGCGACACAGCAGTCGAGCTTCTCAGGAGATGGCTCGAAGCCCAGACCCACGTTTCAGATCTCGACTTCAAGAAGATCTGGAAGGGTCTCTTCTACTGCGTTTGGCACGCCGACAAGCACGAAGTACAGGCCCAGCTCATCGACAAACTCGCTTCTCTGATTCGAACACTCGACCTTGCCCTCGCTCGGCACTACTTCCAGGTATTTCTCTTAACCATGGTACGCGAATGGAGTGGAATTGATCATCTGCGACTAGACAAATTCTATCTCATGCTCAGCCGATTTCTTCATCATCTTTTTCTCCTTTTAGATGACCATGGGTGGGACTCTGAGTTGACAAAAGGATTCATGGCGGATTTGAGGGACGGATCCCTTTTGGCCGAAGATAAGTACTCTGCAAAGGGGGTTAATCTTCACTTTGTTGATGTTTATCTCAATGAGCTTGCTGATTTTCTACCCCTTGGGATAGAAACTTTTGGTCTGGTATTTGAGCCCCTTTATTCTGTTCTGGCCAAGTCTCCTGATAAGCTTTTGGTCAGCAGAGTAAGGCTCAATGTGTTTGATTGCCTTTTGGAAAATGGGAAGAAACTTATTAAGCGCAGACAAGAGCAACGACAAGGTGATGACGTTGTTGTTGATGATAATGATAAAGTGGAGAAGTTGGGACTCATTGCGGTTACAATGGGCATTGCGAACGGGCTCTTTGAGTTGGCTACCGCAGATTCGACTCTGCAGGCCAACAGGAAAGTTATCTATTCTTTGTACGAGGATTTCGGCAAGCTGGAGAAGTATTTCTCGACTTCTGGCATATCAATTTTCCCAAATGGGGTGAAGAAGAGGAAGCTATCTGCAGAGGAGTCTTCAGTTGCAGTGGATGACGCGAATCAGCAGGTAGATGATAAAATGGAGATTGTTGAAGAAGTCAGAGTGGACCAGTTAGGGAAGAAGATAAAAGAGATAGAGAATTTGGACGCTATCGAAGAAGGCAGCCTGGATAAATTAGGTAAGAAGATAAAAGAAGTTAAGAAGAGCAAATTAGAGAAAGTCAAAGGGAAGGGCAAATCCAAGAAGGCTAAAAACCTTGCAGCTAGTGAAGATGGGACCTCCGCAAAAAAGAAGGCGGCTAAAAAGTTTGTGTCAAGTGAAGATGGGACCTCTGCAATAAAGAAGAAGATTAAGACGCTTGCATCTAGTGAAGATGGCACCTCTGCAATAAAGAAGAAGGCTAAAAAGCTTGCATCCAATGAAGACGGAACCTCTGCGATGAAGTCTAAAATAAAGGGTAGCTCGGAGCTTCGTAAAAGaAAATCTTGTGTTAAAGAGCAAAAGAGCGGAACGGGTGAAGCAATGATTGATCCTGTAGGCAACACAGATGATGGTGTGAATAATGATCAAAGCATGCCATCTTTAGATAATAATTCTCAAGATTTCATGGGGTTTGGCGATTCCGTGATCTCAAATCTTCAAAAGGAGTTTGAGAAAGTTGCCGCAGAACTAGGGGATGGTATTGATCAGTATGGTTCGCCTGTTATGTCTTTGGCAGCTCCGGTATCTCCTTCAGACGTAGGGTCAAAAAAGAGGAAAAGGGTAAAAAGTGTAGAAAACAAGGTTGCTAGAAGTCCAAGTTTATCAACTGGCCCTAGCACTTTCAGTAATTGTGGTAAGAGTGGTGAGAAAAGTGTGAAGAAGGTTAGATTTTCTATGAAAAGTAATCTTGTCTGGAAGCCTCACAGCCCACTGCCCCCCCAGAGCTTAAGGGTACCCCCGTCTGCCACTCCAAGAGGCAGTGCACTGAAGAAGGGAGTACCTCCAGGTCCAATCCGCATCATGAAAGAATCACCTAGTCCCAAAAGAATCAGGCGGAAGGCTCTTTCTGCTCGGAAGAGCCAGAAAATCTTGAAAAGCAATTTGCCAAACGCCAAGCTGATTCGCAAACGGCGGTCGAGTGTTTTGTAA___CAAATGCAGCAAAATTTCTACACAGTTGCAACATCATGGAGCCATGTGAATATGGCGACACTGTCTGGGTTCTTAGCCATTTTTTGTGTAAGAAAGTGATATTACTGTTGTCAAAACCTAGTTATCAGTCTCTTTATGATAATTCCATTAGCTTTTGCTTTCAGCACAGATGTTTACATTAAAAGAATTGACAGTGGATAGGTGAAAGAAGGCTTTTATGAAATGCTATTTTTTGGTCAGAACTAAAAAGCGACAACAATAGCTGTCTAAACTGAAATTTGGTATGTATTTTTGGATCTTGCATTGATTCTTCTTCAATTAAGTCAAGTAAACATGCCAAGATTATAAGCTGATTCCTGCAAAAAAATAATTCATCAACAATAGAATTTACTTGCTTTTACAAAGAAT

Fln Alignment:

sp_v1.1_unigene22641___KHLASCNKKTRDTAVELLRRWLEAQTHVSDLDFKKIWKGLFYCVWHADKHEVQAQLIDKLASLIRTLDLALARHYFQVFLLTMVREWSGIDHLRLDKFYLMLSRXXXXXXXXXXXXGWDSELTKGFMADLRDGSLLAEDKYSAKGVNLHFVDVYLNELADFLPLGIETFGLVFEPLYSVLAKSPDKLLVSRVRLNVFDCLLENGKKL--IKRRQEQRQGXXXXXXXXXXXEKLGLIAVTMGIANGLFELATADSTLQANRKVIYSLYEDFGKLEKYFSTSGISI
F6GXI5_______________RHLASCDKSTRDEALRLLHTWLPSQSQVSEEDMKKVWKGLFYSLWHADKTPVQSDLIDRLASLLTTLNLPLSIHYFSVFLLTMRREWPGIDALRLDKFYLLIRKFMYNFFLVLKNNSWDLEISKRLIVVLE----LEDGRFSGNGVGYHVASVFLEELRPFLPVRREIVSVLFEPFVEVMGRSADKVLVGKVKSNVFDFLVRMGQRLLEVKRLGGDEGGDGDAV-------AFGTLAVGFGFSKKFYELGSAPDCLQGNRKVLFGLHEGFAKLEKDFASARIEI

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
609	71			14	0.984337
610		85	14		0.993533
612	85	14			0.993533
614			16	83	0.994512
615			16	83	0.994512
617		16		83	0.994512
655		75	25		0.996473
775			20	80	0.995493
811		85	14		0.993533
886	12	12	75		0.975346
887		12	87		0.992554
888		12		87	0.992554
890	87			12	0.992554
893	87	12			0.992554
894			87	12	0.992554
895	87			12	0.992554
897			12	87	0.992554
898	87	12			0.992554
899	87			12	0.992554
901			87	12	0.992554
903	12			87	0.992554
905	87			12	0.992554
906	87	12			0.992554
907	12			87	0.992554
939	83		16		0.994512
953	85		14		0.993533
957	85	14			0.993533
958	85			14	0.993533
959			85	14	0.993533
960	83	11	5		0.999887
962		93		6	0.999453
963	82	6	3	6	0.991673
964	82		13	3	1.0
965		86		13	1.0
966		6	93		0.999453
969	93			6	0.999453
970	89	3		6	0.998304
977		6	93		0.999453
978	93			6	0.999453
980	6	3	89		0.998304
1019		53	46		1.0
1526	88		11		0.923564
1527		11		88	0.923564
1531	11		88		0.923564
1533	22	77			0.999999
1534		11	88		0.923564
1543		12		87	0.992554
1545	12		87		0.992554
1552		12		87	0.992554
1555	12	87			0.992554
1658	33		66		0.997452
2274	16		83		0.994512
2555		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain