SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22636

Length: 2840 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene22636
ATGGGGGTGATTGTCGAACCAAGAACCAAGAAGTTAGAAGCGCGCACTCTGGGAATTGTGGATCGCTCGAGTCGATTATTGTTAAATCAGGCATTGTGGTATAGTGGGGAATTCGATCATTTATCCGTTATCTAGCAGGAGTTGTGGTATCGATTTTCATCAATTTCTGTGCTTATTGGAGATAAATTTAGCGGAAGAAGTGCCGCTTGATTGTTTGAAGCCGCAAAATGAGTCCTACGTACGCGTATGGCGAACCCAGCCCACAAACTTATCCTCCATATTACTGGGCTCCGCCAAATGTACCACGTCCCCAGCCAATTTCAGCTCCTTGGATAGAACCTTATTATCGTTATAGAGAATCGCCGGGGAATTATTATGGTCATCTGCACGATTGTGGCTTTCAGTATGGGGGCGGTCCGTACTGGCATTGTCCTCTCGAGTATGAATTTTACAGGCCTAAGTTCAGGAATTATGAACGAGATGGTAGAGATTTTAGGCCTTACACCTGTGCTCCTCCGCCTTCTTCTTTTGTATATAGTCGACCTTTCAATCCCAATGAACAATTCCGGCACCCAGATGATTACCCGATGAGATTCGTACCCACGACTGGTTATGATCGCTTTGGCCCTTATCCCTTTGAACGGCATTGCTGCGGGTGCCCGAATCACGTAGGTTATCCTAAGCCGGTTGAGAGGATAAGTGATGACGTTGTTGATGAAAAACGAATTAAGGATTCTAAGGACAGTGATGGTAAATCGATGACGGATGATATCGAGGAAAAGAGGTCGGAGAATTTGCAGGAGCTTCCGGAACACGTTGTCTGGATTCCGAGATCTTTGTCTGATCGCAATGAGGAGAGACATCCCGTGTATTGGGTTCCTTGGAACAGAAAATCCACAGAGGGTGATCGAGAGCAGGCGTTTCCCGGCTATTGGATTCCTCTGGATTCGAACACGGCATCTCGTGATCGGAAAACTGAAGACGAAAGTGCAGAGGAGAGACATCCCGTGTATTGGGTTCCTTGGAGCAGAAAATCCACAGAGGGTGACCGAGAACGGCCGTTTACAGGTTATTGGATTCCTTTCGATTCGAACACGGGATCTCGTGATCGGAAAACTGAAGATGAAAACGCGAAGTTTCCATCATTTCCCGTCTTCTGGATTCCGAGAAAGTTTGAAGGAGAAGGAGATGCAAAGGTGCGTAACCCTCCGCAAGAGACCAAGAAAACAGAGGGACGAGATGCCTCGAATGTAGAAAACATCCAACAAAAGTCCATAAAAACAAATGGAGGAGAAGCCGAGATATTAAACGAGGGCATTAATGGTAGGCCTGCACAGGAGAAAAAGGAAGCTGCAGTGGCGAGAGAAATTCCTGTGAAACAGCTTGGGGAAGAAGGAAAAGCTTCACAATCCTCGAAAGTGGAGAGGGTTTCGAAGGTTTCAGATGATAATCATCACGTGAAGAAGGCATCTTCGCCCCGGGCTTCCAAACTTCCTCCTGTGTGTCTGAGGGTCGATCCTCTGCCTAGCAAGAAAACGAATGGGACGAGCTCTCCCAGGTCTCCTAGTCCTCCTCACAAAGAGGAAGAAAACAAAGATAAGGTAGCTGTAAAGGCCGAAGGAAATGCAAATGCCAATAGGACAAGCTCTTCCAGGTCTCCCAGCCCTCCTCGTAAAGTGGAAGAAAGCAAGGGTAAGGTTGCTGTAAAGGCTGAAGGAAATCCAAATAACAGTGCTTCAAAAGTTGATACAGAAACAAATAAGGGTGAACAGCAATCCAATGCCAGTGCTTCAAATGTTAGCATAGAAACCAAAAAGAATGAACAGCTGACGAAAGAAATAGAGATCGGTCAGGACCAAGCGGCCGTGAAAATTCAGGCCCTTTATCGTGGATATCAGGTACGAAAGTTTCAGCCTCTGACAAAACTCCGCGAGATTATGAAAATTAAAGGACGGGTCGAGGATCTTAGACAGCAAATGTCAAGTCCTAAGTTCATCGAAGAGATGAGCAGAGATTCTAAAGCTAGGGGGAAATTTAATGAGACTCTCATGGGCCTCTTGCTTCAGCTAGATACGATTCAGGGCTTGCATCCAGCTGTGAGGGATGTGAGAAAATCTGTGGCACGAGAGCTTATTACATTGCAAGAGAAGCTTGATACGCTGGTTGAACAGGCTGGCGCTAATAAATTGCAGGAAGTCATCAGAGAAACTGCAGAGTCAGATAAGATTGCTGCGGCTGAGAAGACGGAAGATCCCATTACAACGTCGGAAGTAAGAGCGATCTTGAATGACATAACTAATGGTAACAATCAGCGGATTGATAGTGAGAAAGCTCTTAATGGAAAAAATGTAGAGAACAAGGGATTTGTCAATTTGGGAATGCTTGAGGTGGAAAATAAAGCCACTAAAGATGGTGAAGGCGTAGAGGAAAGAGCAGCAGTACGGCAGGATGTTCTTCAAGTCCAGAACGAAGACGTTAAAGATGGGGATGATTTAGAGAAGGCACCTGTCAAGCAGGAAGGTTGTCTATGTGGAACCACTACAAAAATTAAATATGAGGAGGTGGAGACTATAAATCAGGATAACAATGTTACAGGAGAAAAGGATTTAATATCAGTCCCTGCTGAAGCAGCCAGTGGCAATGCTACTACAGAAGAAAGGGTTGAATCGGGATCCAGTAATCCTAGGTTGGGGCAAAATCTGTTAGATTCAGCCGTGCCCAAGGAAGATGTTGCTAATGAGAAACTGTCATCTGCGATTCTGGGGCAAGAGCATGGCATTGTAGACGTCGAGAATGAGAAGTTGTTAGATTCATCTATGTCTGGGGAAGAAGATGCTGTC

Ace file of the UniGene sp_v1.1_unigene22636 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BAG6; BAG6 (BCL-2-ASSOCIATED ATHANOGENE 6); calmodulin binding / protein binding	-	-	3.0e-36	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	protein	-	-	0.0	49%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stress	GO:0006950	Biological Process	0.0	49%

Source	InterPros	Term	Type	e value	Identity
Blast2go	IQ motif, EF-hand binding site	IPR000048	-	0.0	49%
Blast2go	BAG domain	IPR003103	-	0.0	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW49

Fln msg: your sequence is longer than subject: 163 - 97

Fln protein: MISRKRGRRICRSFRNTLSGFRDLCLIAMRRDIPCIGFLGTENPQRVIESRRFPAIGFLWIRTRHLVIGKLKTKVQRRDIPCIGFLGAENPQRVTENGRLQVIGFLSIRTRDLVIGKLKMKTRSFHHFPSSGFRESLKEKEMQRCVTLRKRPRKQRDEMPRM*

Protein Length: 164

Fln nts: ATGGGGGTGATTGTCGAACCAAGAACCAAGAAGTTAGAAGCGCGCACTCTGGGAATTGTGGATCGCTCGAGTCGATTATTGTTAAATCAGGCATTGTGGTATAGTGGGGAATTCGATCATTTATCCGTTATCTAGCAGGAGTTGTGGTATCGATTTTCATCAATTTCTGTGCTTATTGGAGATAAATTTAGCGGAAGAAGTGCCGCTTGATTGTTTGAAGCCGCAAAATGAGTCCTACGTACGCGTATGGCGAACCCAGCCCACAAACTTATCCTCCATATTACTGGGCTCCGCCAAATGTACCACGTCCCCAGCCAATTTCAGCTCCTTGGATAGAACCTTATTATCGTTATAGAGAATCGCCGGGGAATTATTATGGTCATCTGCACGATTGTGGCTTTCAGTATGGGGGCGGTCCGTACTGGCATTGTCCTCTCGAGTATGAATTTTACAGGCCTAAGTTCAGGAATTATGAACGAGATGGTAGAGATTTTAGGCCTTACACCTGTGCTCCTCCGCCTTCTTCTTTTGTATATAGTCGACCTTTCAATCCCAATGAACAATTCCGGCACCCAGATGATTACCCGATGAGATTCGTACCCACGACTGGTTATGATCGCTTTGGCCCTTATCCCTTTGAACGGCATTGCTGCGGGTGCCCGAATCACGTAGGTTATCCTAAGCCGGTTGAGAGGATAAGTGATGACGTTGTTGATGAAAAACGAATTAAGGATTCTAAGGACAGTGATGGTAAATCGATGACGG_-_ATGATATCGAGGAAAAGAGGTCGGAGAATTTGCAGGAGCTTCCGGAACACGTTGTCTGGATTCCGAGATCTTTGTCTGATCGCAATGAGGAGAGACATCCCGTGTATTGGGTTCCTTGGAACAGAAAATCCACAGAGGGTGATCGAGAGCAGGCGTTTCCCGGCTATTGGATTCCTCTGGATTCGAACACGGCATCTCGTGATCGGAAAACTGAAGACGAAAGTGCAGAGGAGAGACATCCCGTGTATTGGGTTCCTTGGAGCAGAAAATCCACAGAGGGTGACCGAGAACGGCCGTTTACAGGTTATTGGATTCCTTTCGATTCGAACACGGGATCTCGTGATCGGAAAACTGAAGATGAAAACGCGAAGTTTCCATCATTTCCCGTCTTCTGGATTCCGAGAAAGTTTGAAGGAGAAGGAGATGCAAAGGTGCGTAACCCTCCGCAAGAGACCAAGAAAACAGAGGGACGAGATGCCTCGAATGTAG___AAAACATCCAACAAAAGTCCATAAAAACAAATGGAGGAGAAGCCGAGATATTAAACGAGGGCATTAATGGTAGGCCTGCACAGGAGAAAAAGGAAGCTGCAGTGGCGAGAGAAATTCCTGTGAAACAGCTTGGGGAAGAAGGAAAAGCTTCACAATCCTCGAAAGTGGAGAGGGTTTCGAAGGTTTCAGATGATAATCATCACGTGAAGAAGGCATCTTCGCCCCGGGCTTCCAAACTTCCTCCTGTGTGTCTGAGGGTCGATCCTCTGCCTAGCAAGAAAACGAATGGGACGAGCTCTCCCAGGTCTCCTAGTCCTCCTCACAAAGAGGAAGAAAACAAAGATAAGGTAGCTGTAAAGGCCGAAGGAAATGCAAATGCCAATAGGACAAGCTCTTCCAGGTCTCCCAGCCCTCCTCGTAAAGTGGAAGAAAGCAAGGGTAAGGTTGCTGTAAAGGCTGAAGGAAATCCAAATAACAGTGCTTCAAAAGTTGATACAGAAACAAATAAGGGTGAACAGCAATCCAATGCCAGTGCTTCAAATGTTAGCATAGAAACCAAAAAGAATGAACAGCTGACGAAAGAAATAGAGATCGGTCAGGACCAAGCGGCCGTGAAAATTCAGGCCCTTTATCGTGGATATCAGGTACGAAAGTTTCAGCCTCTGACAAAACTCCGCGAGATTATGAAAATTAAAGGACGGGTCGAGGATCTTAGACAGCAAATGTCAAGTCCTAAGTTCATCGAAGAGATGAGCAGAGATTCTAAAGCTAGGGGGAAATTTAATGAGACTCTCATGGGCCTCTTGCTTCAGCTAGATACGATTCAGGGCTTGCATCCAGCTGTGAGGGATGTGAGAAAATCTGTGGCACGAGAGCTTATTACATTGCAAGAGAAGCTTGATACGCTGGTTGAACAGGCTGGCGCTAATAAATTGCAGGAAGTCATCAGAGAAACTGCAGAGTCAGATAAGATTGCTGCGGCTGAGAAGACGGAAGATCCCATTACAACGTCGGAAGTAAGAGCGATCTTGAATGACATAACTAATGGTAACAATCAGCGGATTGATAGTGAGAAAGCTCTTAATGGAAAAAATGTAGAGAACAAGGGATTTGTCAATTTGGGAATGCTTGAGGTGGAAAATAAAGCCACTAAAGATGGTGAAGGCGTAGAGGAAAGAGCAGCAGTACGGCAGGATGTTCTTCAAGTCCAGAACGAAGACGTTAAAGATGGGGATGATTTAGAGAAGGCACCTGTCAAGCAGGAAGGTTGTCTATGTGGAACCACTACAAAAATTAAATATGAGGAGGTGGAGACTATAAATCAGGATAACAATGTTACAGGAGAAAAGGATTTAATATCAGTCCCTGCTGAAGCAGCCAGTGGCAATGCTACTACAGAAGAAAGGGTTGAATCGGGATCCAGTAATCCTAGGTTGGGGCAAAATCTGTTAGATTCAGCCGTGCCCAAGGAAGATGTTGCTAATGAGAAACTGTCATCTGCGATTCTGGGGCAAGAGCATGGCATTGTAGACGTCGAGAATGAGAAGTTGTTAGATTCATCTATGTCTGGGGAAGAAGATGCTGTC

Fln Alignment:

sp_v1.1_unigene22636___LSGFRDLCLIAMRRDIPCIGFLGTENPQRVIESRRFPAIGFLWIRTRHLVIGKLKTKVQRRDIPCIGFLGAENPQRVTENGRLQVIGFLSIRTRDLVIGKLKMKTRSFHHFPSSGFRESLKEKEMQR
A9NW49_______________LSGFRDLCLIAMR-----------------------------------------------RNIPCIGFLGIENPPRVAENGRIPVIGFLWIRTRDLVIGKLKMKMRSYHHFPSSGFRQSLKEKGTRR

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
202		10		90	0.90298
203		10		90	0.90298
204		10	90		0.90298
283	16			83	0.994512
284		83		16	0.994512
285		83		16	0.994512
287		66		33	1.0
288	66	16			0.988813
289		20		80	0.995493
292			25	75	0.996473
594	75	25			0.996473
682		75		25	0.996473
1199		26	73		1.0
1264		16		83	0.999991
1309		11		88	0.923564
1310		11		88	0.923564
1313	11			88	0.923564
1316		88		11	0.923564
1329	12	87			0.992554
1344		87		12	0.992554
1345	87		12		0.992554
1346	12		87		0.992554
1348	87			12	0.992554
1349	12		87		0.992554
1350	12		87		0.992554
1351	87	12			0.992554
1354		12		87	0.992554
1355		12		87	0.992554
1356	12			87	0.992554
1357	12		87		0.992554
1359	87		12		0.992554
1361			85	14	0.993533
1363	14	85			0.993533
1366	14		85		0.993533
1367		14	85		0.993533
1432			66	33	1.0
1462	12	87			0.992554
1463		12		87	0.992554
1499		16		83	0.994512
1500		16		83	0.994512
1501	16			83	0.994512
1634		25	75		0.996473
1635		25	75		0.996473
1637			75	25	0.996473
1707	33		66		0.997452
1738	66	33			0.997452
1740		33	66		0.997452
1742			66	33	0.997452
1841	20			80	0.995493
2067		87		12	0.992554
2069		12		87	0.992554
2071		12	87		0.992554
2114		14		85	0.993533
2115		14		85	0.993533
2117	83			16	0.994512
2118			16	83	0.994512
2120	16	83			0.994512
2169	75		25		0.996473
2358		25		75	0.996473
2465		85		14	0.993533
2616		20		80	0.995493
2800		25		75	0.996473
2839	25	75			0.996473
2843	25	50			0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain