SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22629

Length: 728 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22629

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	fasciclin-like arabinogalactan protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	apoplast	GO:0048046	Cellular Component	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	FAS1 domain	IPR000782	-	0.0	77%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
452		90		10	0.90298
453	90		10		0.90298
456		90		10	0.90298
457			10	90	0.90298
458		90		10	0.90298
462		10	90		0.90298
464		10	90		0.90298
465	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain