SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22618

Length: 2103 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22618
CGTCGTGACCTTGGCTGTCACTGGGGGCCACCCGATGTATCAATATAAGGGCCGTCGTGACCTTGGCTGTAAATCATCTCTTTGCAGTCTAAATTCGAAATCACCCGAAACCCTTGTGCGAGGAAGCAACTGCAGCAATGGCGGAGTACGATCTAACATCGAAGATTGCTCCCCATCTGGACCGCCATCTTGTTTTCCCACTTCTGGAGTTTCTGCAGGAGAAACAGCTCTATCCGGACGAACAAATTCTCAAGTCGAAGATCGACCTTCTCAGCAAAACCAACATGGTCGACTACGCCATGGACATCCACAAGAGTCTTTACCGCACCGAAGACGTTCCACAAGAAATGACAGACAGGCGCATTGAAGTAGTTGCAAGACTAAAGTCATTGGAAGAAATGGCTGCACCACTGATTAGTTTTCTACAGAATCCATCACTTGTTCAGGAGCTTCGTTCTGATAAACAATATAATCTCCAGATGCTGAATGATCGGTACCAGATTGGACCTAACCAGATAGAGGCGCTATACCAATATGCTAAGTTTCAGTTTGAATGCGGAAACTACTCGGGGGCAGCAGATTTTTTATACCAATATCGCACTTTTTGTACGAACAGTGAAAGGAGTTTGAGTGCCTTGTGGGGCAAGCTTGCAGCAGAGATTCTGATGCAAAATTGGGATATTGCTCTGGAAGAGCTTAATCGGTTGAAAGAAATTATTGATTCTAAGAATTTTGCATCACCCCTCAATCAATTACAAAATAGGACATGGTTGATGCATTGGAGTCTCTTTATTTTCTTCAATCATGAGAATGGCAGGAATGGGATCATAGATCTCTTTTTCCAAGAGAGGTATTTGAATGCAATCCAGACAAATGCACACCATCTTCTTCGTTATCTTGCTACTGCAGTGGTTGTTAATAAGAGGAGGAGAAATATGCTGAAGGAGCTGATTAAAGTTATCCAGCAAGAGCAATATACTTATAAAGATCCTATCACAGAATTTTTGGAATGTTTGTATGTAAACTATGATTTTGAAGGGGCGCAGCAGAAACTTGTTGAGTGTGAAAAAGTAATACTGAATGATCCTTTCCTCGGTAAGCAAGTTCAGGAGGGCAATTTTGTTACAGTGCCTCTGAGGGACGAGTTTCTTGAAAATGCACGGCTTTTCATTTTTGAGACATATTGTCGCATTCATCAATGTATTGACATACGAATGCTTGCTGAAAAACTCAGTATGAGCTATGATGAAGCAGAGCGATGGATAGTGAACCTTGTAAAGAATGCAAAGTTGGATGCTAAAATTGATTCGACATCAGGGACTGTGGTCATGGGAACTAACCACACAAATGTGTACGAGCAAATTATAGAGAATACAAAACAGTTGTCTATGCGAACATATGTGTTGGCAAATAATGTTGCTTCAATTGCTGTGCCTGTCACTCAAGTGCCTACTATTCGATAGAGATTTGAAATTAACAAGGTCGATGCTGCGAAAGGTTGAGTTCGATGCAGGGAAACTTTGAGGTTTTCCTTTGCAAAATTGATTGAATTTCTAGAAGTTAAGTTTGCGTTTTTTTGTTGATGACGTTTGCCAGAGCTAATTTTCCAGAGCTAATCAGCGCAATTGTAACCCAACTATTATTTAACCCATTTTTTCTGGTGAATTTGAAAAACGCCTGGAATGGATTAAAATAATTGCTTTATAAAGAACAGGCAGAAGTCACTGCGTGTTGTATTTTTGGAGCAGACTTTGTTTGATATTACAACATAGCAGTATTTATGACGGCGTCATCATGGTACAAGGTGTTTTCATTTATGTTGAAACCTGCATGTTGAAAGCAAAGCCGAGTATGAGTATTTCAATTCATGTTGCATACAAGCACGTGCGAAACCCATAATAGGCCGGAGTGCATTTTGAATGGAATAAATTCAAAATATATGCTATCGGCATAGTATGATAAGTCCTTGGTTACGAGGATTCTGTGATAAAATGCCAAACAACGTCATTTATTGGAAAAATTGAAAAAACTGCGTAGCTTAGGTGGTTTGTTCCACTGTGGTCTACAATTATAACTGTAATGGTAATATATTTTTATTCTACT

Ace file of the UniGene sp_v1.1_unigene22618

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit 6 n=3 Tax=Zea mays RepID=B6TRV3_MAIZE	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	90%
Blast2go	flower development	GO:0009908	Biological Process	90%
Blast2go	protein binding	GO:0005515	Molecular Function	90%
Blast2go	signalosome	GO:0008180	Cellular Component	90%
Blast2go	eukaryotic translation initiation factor 3 complex	GO:0005852	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Proteasome component (PCI) domain	IPR000717	-	90%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	90%
Blast2go	Translation initiation factor 3, subunit 6, eukaryotic	IPR016650	-	90%
Blast2go	Eukaryotic translation initiation factor 3 (eIF3), subunit 6, N-terminal	IPR019010	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSI7

Fln msg:

Fln protein: MAEYDLTSKIAPHLDRHLVFPLLEFLQEKQLYPDEQILKSKIDLLSKTNMVDYAMDIHKSLYRTEDVPQEMTDRRIEVVARLKSLEEMAAPLISFLQNPSLVQELRSDKQYNLQMLNDRYQIGPNQIEALYQYAKFQFECGNYSGAADFLYQYRTFCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKNFASPLNQLQNRTWLMHWSLFIFFNHENGRNGIIDLFFQERYLNAIQTNAHHLLRYLATAVVVNKRRRNMLKELIKVIQQEQYTYKDPITEFLECLYVNYDFEGAQQKLVECEKVILNDPFLGKQVQEGNFVTVPLRDEFLENARLFIFETYCRIHQCIDIRMLAEKLSMSYDEAERWIVNLVKNAKLDAKIDSTSGTVVMGTNHTNVYEQIIENTKQLSMRTYVLANNVASIAVPVTQVPTIR*

Protein Length: 443

Fln nts: CGTCGTGACCTTGGCTGTCACTGGGGGCCACCCGATGTATCAATATAAGGGCCGTCGTGACCTTGGCTGTAAATCATCTCTTTGCAGTCTAAATTCGAAATCACCCGAAACCCTTGTGCGAGGAAGCAACTGCAGCA_-_ATGGCGGAGTACGATCTAACATCGAAGATTGCTCCCCATCTGGACCGCCATCTTGTTTTCCCACTTCTGGAGTTTCTGCAGGAGAAACAGCTCTATCCGGACGAACAAATTCTCAAGTCGAAGATCGACCTTCTCAGCAAAACCAACATGGTCGACTACGCCATGGACATCCACAAGAGTCTTTACCGCACCGAAGACGTTCCACAAGAAATGACAGACAGGCGCATTGAAGTAGTTGCAAGACTAAAGTCATTGGAAGAAATGGCTGCACCACTGATTAGTTTTCTACAGAATCCATCACTTGTTCAGGAGCTTCGTTCTGATAAACAATATAATCTCCAGATGCTGAATGATCGGTACCAGATTGGACCTAACCAGATAGAGGCGCTATACCAATATGCTAAGTTTCAGTTTGAATGCGGAAACTACTCGGGGGCAGCAGATTTTTTATACCAATATCGCACTTTTTGTACGAACAGTGAAAGGAGTTTGAGTGCCTTGTGGGGCAAGCTTGCAGCAGAGATTCTGATGCAAAATTGGGATATTGCTCTGGAAGAGCTTAATCGGTTGAAAGAAATTATTGATTCTAAGAATTTTGCATCACCCCTCAATCAATTACAAAATAGGACATGGTTGATGCATTGGAGTCTCTTTATTTTCTTCAATCATGAGAATGGCAGGAATGGGATCATAGATCTCTTTTTCCAAGAGAGGTATTTGAATGCAATCCAGACAAATGCACACCATCTTCTTCGTTATCTTGCTACTGCAGTGGTTGTTAATAAGAGGAGGAGAAATATGCTGAAGGAGCTGATTAAAGTTATCCAGCAAGAGCAATATACTTATAAAGATCCTATCACAGAATTTTTGGAATGTTTGTATGTAAACTATGATTTTGAAGGGGCGCAGCAGAAACTTGTTGAGTGTGAAAAAGTAATACTGAATGATCCTTTCCTCGGTAAGCAAGTTCAGGAGGGCAATTTTGTTACAGTGCCTCTGAGGGACGAGTTTCTTGAAAATGCACGGCTTTTCATTTTTGAGACATATTGTCGCATTCATCAATGTATTGACATACGAATGCTTGCTGAAAAACTCAGTATGAGCTATGATGAAGCAGAGCGATGGATAGTGAACCTTGTAAAGAATGCAAAGTTGGATGCTAAAATTGATTCGACATCAGGGACTGTGGTCATGGGAACTAACCACACAAATGTGTACGAGCAAATTATAGAGAATACAAAACAGTTGTCTATGCGAACATATGTGTTGGCAAATAATGTTGCTTCAATTGCTGTGCCTGTCACTCAAGTGCCTACTATTCGATAG___AGATTTGAAATTAACAAGGTCGATGCTGCGAAAGGTTGAGTTCGATGCAGGGAAACTTTGAGGTTTTCCTTTGCAAAATTGATTGAATTTCTAGAAGTTAAGTTTGCGTTTTTTTGTTGATGACGTTTGCCAGAGCTAATTTTCCAGAGCTAATCAGCGCAATTGTAACCCAACTATTATTTAACCCATTTTTTCTGGTGAATTTGAAAAACGCCTGGAATGGATTAAAATAATTGCTTTATAAAGAACAGGCAGAAGTCACTGCGTGTTGTATTTTTGGAGCAGACTTTGTTTGATATTACAACATAGCAGTATTTATGACGGCGTCATCATGGTACAAGGTGTTTTCATTTATGTTGAAACCTGCATGTTGAAAGCAAAGCCGAGTATGAGTATTTCAATTCATGTTGCATACAAGCACGTGCGAAACCCATAATAGGCCGGAGTGCATTTTGAATGGAATAAATTCAAAATATATGCTATCGGCATAGTATGATAAGTCCTTGGTTACGAGGATTCTGTGATAAAATGCCAAACAACGTCATTTATTGGAAAAATTGAAAAAACTGCGTAGCTTAGGTGGTTTGTTCCACTGTGGTCTACAATTATAACTGTAATGGTAATATATTTTTATTCTACT

Fln Alignment:

sp_v1.1_unigene22618___MAEYDLTSKIAPHLDRHLVFPLLEFLQEKQLYPDEQILKSKIDLLSKTNMVDYAMDIHKSLYRTEDVPQEMTDRRIEVVARLKSLEEMAAPLISFLQNPSLVQELRSDKQYNLQMLNDRYQIGPNQIEALYQYAKFQFECGNYSGAADFLYQYRTFCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKNFASPLNQLQNRTWLMHWSLFIFFNHENGRNGIIDLFFQERYLNAIQTNAHHLLRYLATAVVVNKRRRNMLKELIKVIQQEQYTYKDPITEFLECLYVNYDFEGAQQKLVECEKVILNDPFLGKQVQEGNFVTVPLRDEFLENARLFIFETYCRIHQCIDIRMLAEKLSMSYDEAERWIVNLVKNAKLDAKIDSTSGTVVMGTNHTNVYEQIIENTKQLSMRTYVLANNVASIAVPVTQVPTIR
C0PSI7_______________MAEYDLTSKIAPHLDRHLVFPLLEFLQEKQLYPDDQILKSKIDLLSKTNMVDYAMDIHKSLYRTEDVPQDMTDRRVEVVARLKSLEEMAAPLISFLQNPSLVQELRSDKQYNLQMLNDRYQIGPNQIEALYQYAKFQFECGNYSGAADFLYQYRTFCTNSDRSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKNFSSPLNQLQNRTWLMHWSLFIFFNHENGRNGIIDLFFQERYLNAIQTNAHHLLRYLATAVVVNKRRRNMLKELIKVIQQEQYTYKDPITEFLECLYVNYDFEGAQQKLVECEKVILNDPFLGKQVQEGNFVTVPLRDEFLENARLFIFETYCRIHQCIDIRMLAEKLSMSYDEAERWIVNLVKNAKLDAKIDSTSGTVVMGTNHTNVYEQIIENTKQLSMRTYVLANNVASMAVPVTQVPTIR

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
57		14		85	0.999981
62	85			14	0.999981
64	14	85			0.999981
68		14	85		0.999981
71		14	78	7	0.999974
73	28	21	14		1.0
74	21	78			1.0
75		14		42	1.0
76	57	14		28	1.0
81	7	71		14	0.999974
82	14			85	0.999981
83		71		28	1.0
84			6	66	1.0
85	6		6	66	1.0
86	20		13	66	1.0
285	81	3			1.0
320		50		50	1.0
443		22		77	1.0
538	88		11		0.923564
543	87			12	0.992554
544	75	25			1.0
546	14			85	0.993533
547			14	85	0.993533
549		85	14		0.993533
1041	25		50		0.995533
1077	90		10		0.90298
1574	33		50		1.0
1575	20			80	0.995493
1590		25		75	0.996473
1607		25		75	0.996473
1608	25			75	0.996473
1609			25	75	0.996473
1613			75	25	0.996473
1614	75			25	0.996473
1622	75	25			0.996473
1623		25	75		0.996473
1624	25	75			0.996473
1625	25		75		0.996473
1627	75			25	0.996473
1631	33		66		0.997452
1671			33	66	0.997452
1720	83	16			0.994512
1722	83			16	0.994512
1723	83	16			0.994512
1726		83	16		0.994512
1729		16		83	0.994512
1730			83	16	0.994512
1731		83		16	0.994512
1735		16		83	0.994512
1741	16			83	0.994512
1748			87	12	0.992554
1777	87		12		0.992554
1805	85		14		0.993533
1898		80		20	0.995493
1957			63	36	1.0
2030	25		75		0.996473
2042			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain