SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22612

Length: 784 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene22612 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S21e, putative; K02971 small subunit ribosomal protein S21e	-	-	1.0e-35	91%
FL-Next	sp=40S ribosomal protein S21; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	2.11138e-38	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular	GO:0005622	Cellular Component	2.11138e-38	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein S21e	IPR001931	-	2.11138e-38	92%
Blast2go	Ribosomal protein S21e, conserved site	IPR018279	-	2.11138e-38	92%

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
300	18			81	0.999994
351	10		90		0.90298
353			10	90	0.90298
357		10		90	0.90298
359	10		90		0.90298
360		10		90	0.90298
361		90	10		0.90298
386			11	88	0.923564
387	11		88		0.923564
391	88	11			0.923564
392		11	88		0.923564
393	11	88			0.923564
395			11	88	0.923564
396			12	87	0.992554
400			12	87	0.992554
401	12			87	0.992554
402		12	87		0.992554
416	33		66		1.0
450	33		66		0.997452
453		66		33	0.997452
454	50	50			1.0
457	50		50		1.0
554		25	75		0.996473
555	75	25			0.996473
556		25	75		0.996473
557	75	25			0.996473
559	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain