SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22592

Length: 880 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22592

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Pathogenesis-related protein PR-1; Flags: Precursor emb\|CAA56174.1\| PR-1 [Medicago truncatula]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	sts14 protein	-	-	69%

Source	InterPros	Term	Type	Identity
Blast2go	Allergen V5/Tpx-1-related	IPR001283	-	69%
Blast2go	Ves allergen	IPR002413	-	69%
Blast2go	CAP domain	IPR014044	-	69%
Blast2go	Allergen V5/Tpx-1-related, conserved site	IPR018244	-	69%

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
23	52	47			1.0
24	47	52			1.0
163	80		20		1.0
192	30		70		1.0
231		26	73		1.0
267		18		81	1.0
314	90	9			0.999842
315		90	9		0.999872
320			90	10	0.999898
321		90		10	0.999898
323			10	89	0.999919
324		10		89	0.999919
326	89		10		0.999919
341	20		80		1.0
343		6		80	0.999961
351	82		5		0.999919
429			11	88	0.923564
448		92		7	0.999664
449		88	11		1.0
452		88	12		1.0
454	84	4			1.0
455		84	8	8	0.998474
456	92		8		0.999718
457	84	8	4	4	0.998474
459	88			8	0.999262
461			8	92	0.999718
463	3	3	83	6	0.989159
465	86			13	1.0
468			89	3	0.998606
470	7	85		7	0.997433
472	7	92			0.999602
477	7	3	88		0.999079
502		70	29		1.0
818	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain