SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22591

Length: 964 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22591

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NRPB4; NRPB4; DNA-directed RNA polymerase; K03012 DNA-directed RNA polymerase II subunit D	-	-	77%
FL-Next	tr=RPB15.9; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	77%
Blast2go	kda subunit of rna polymerase ii	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	86%
Blast2go	Pyrimidine metabolism	00240	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	86%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	86%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	RNA polymerase II, Rpb4	IPR005574	-	86%
Blast2go	RNA polymerase II, Rpb4, core	IPR006590	-	86%
Blast2go	HRDC-like	IPR010997	-	86%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
483	87		12		0.992554
484	87			12	0.992554
485	87	12			0.992554
487			87	12	0.992554
491		12	87		0.992554
494		87	12		0.992554
495	87	12			0.992554
499		12	87		0.992554
502		12	87		0.992554
557	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain