SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22587

Length: 1013 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22587

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ENT domain containing protein	-	-	5.0e-07	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	unknown [Picea sitchensis]	-	-	2.49084e-40	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQA9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 265 - 359

Fln protein: RRDLGCHSGLKHFIV*FFW*SALAKLDQFGFLFIRIGEMTSGLKLGAEDRGFNEFSPIPFGLFTEDVENISLESAKSSTHADKNGSETRVSELLGESKADGHSGNLKVVGGQLASKSSKRKLETKDQSHYDSSCKRKFPTEKDLKGTGDKELYESHVGSQKRDLHKDLGFPAEDEAITICLPYIQYLCDQNRCSPGNTPVIRGKTSLKQMQLMAYRTVLKALYLQKTLTLKWKDEILLTDLRDLLHISNAEHAKALKCIMSIHY*

Protein Length: 266

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCTTGAAACACTTCATAGTATGATTCTTCTGGTAGTCTGCTTTGGCGAAGCTTGACCAGTTTGGGTTTTTGTTCATAAGGATTGGAGAGATGACAAGTGGGTTAAAGCTTGGGGCAGAGGATAGGGGATTCAATGAATTCAGTCCAATCCCTTTTGGACTCTTTACTGAAGATGTGGAGAATATTAGTTTGGAATCAGCGAAAAGCTCTACTCATGCTGATAAAAATGGAAGTGAAACTAGGGTTTCAGAACTTTTAGGAGAATCTAAGGCAGATGGGCACTCTGGTAACCTGAAAGTTGTAGGTGGTCAGCTGGCGAGTAAATCTTCTAAGAGAAAGTTGGAAACTAAGGATCAGTCCCATTATGATTCTTCCTGCAAAAGGAAATTCCCAACTGAAAAAGACTTGAAGGGTACAGGGGATAAAGAGCTTTATGAGTCCCATGTTGGGAGCCAGAAAAGAGATCTGCATAAAGATCTTGGATTCCCTGCCGAAGATGAAGCCATTACAATCTGTCTACCCTACATACAGTATCTGTGTGACCAAAATAGATGTTCTCCTGGCAATACCCCTGTAATAAGGGGAAAGACAAGTTTAAAACAGATGCAGTTGATGGCTTATCGTACCGTACTCAAGGCATTATATCTCCAAAAGACTCTGACTCTTAAATGGAAAGATGAAATTCTCCTTACAGACCTTCGGGATTTGCTGCACATAAGCAATGCAGAGCATGCAAAGGCGCTGAAGTGTATAATGTCTATTCATTATTAA___CTAGGAGTGTCATAAACTCTGGGGAATATAGTTGGGTTCTCTTTTATAATCAGGCCAGATTTGAAGAATACAATAGCTTCTGCTCTTTACATTTTGTCAGATTTGAAGAAGACAATATCTTCGGCTCCTTACATTTTGTCTTATTATACAACAGTATGATTTCTATGGACAAATTCAGGATTAATGGAGTTTATTGGTTTATTTATAATTATATTTTC

Fln Alignment:

sp_v1.1_unigene22587___AEDRGFNEFSPIPFGLFTEDVENISLESAKSSTHADKNGSETRVSELLGESKADGHSGNLKVVGGQLASKSSKRKLETKDQSHYDSSCKRKFPTEKDLKGT---GDKELYESHVGSQKRDLHKDLGFPAEDE-AITICLPYIQYLCDQNRCSPGNTPVIRGKTSLKQMQLMAYRTVLKALYLQKTLTLKWKDEILLTDLRDLLHISNAEHAKALKCIMSIHY
B8LQA9_______________SENMGIKEPNPKCPLLSAGDVENIPSKSVKRSNKTNEKRSEVKVSESSGECKADRQCETLKDGCSQPTKKSSKRKQGTKDQSNNGSACRRKILSEENVDGTETHDEENIPNFHVKVVKRAPLKDLSSPTESENTFTISIPYLE-IVDQNICHPGNTSEIHGKVTLKQMYLLAYHFVLKALYLQG--AHNWKLETLLTDLREVLHINNEEHANELRCITSGQY

SNPs (tot: 85)

Position	A %	C %	G %	T %	Probability
187			8	91	0.999766
189			8	91	0.999766
192		8		91	0.999766
193			91	8	0.999766
194	91			8	0.999766
195	91		8		0.999766
197	91	8			0.999766
202		8	91		0.999766
204		8	91		0.999766
205	91			8	0.999766
206	91	8			0.999766
207	8			91	0.999766
313	92		8		0.999718
373	87	12			1.0
374	87		12		1.0
375			87	12	1.0
380	87	12			1.0
381			87	12	1.0
383		86	13		1.0
384		86	13		1.0
386	81			18	1.0
387			13	86	1.0
391	4	9	86		0.999642
442			90	10	0.90298
443			90	10	0.90298
446	90	10			0.90298
449	90		10		0.90298
450	90			10	0.90298
451		10	90		0.90298
456		11		88	0.923564
457	11			88	0.923564
479	83			16	0.999991
483	83	16			0.999991
484	83			16	0.999991
561		15		84	1.0
570	82			17	1.0
571	82		17		1.0
572	82		17		1.0
573	82	17			1.0
575	82			17	1.0
576		17	82		1.0
579	11		88		0.999952
595		87		12	0.999964
597		71	28		1.0
601	9			90	0.999872
602	71	9	19		1.0
603	85	14			1.0
604		19		80	1.0
605	66	23		9	1.0
606	71		9	19	1.0
607			75	20	1.0
608		10	90		0.999898
609			90	10	0.999898
610		20	80		1.0
611	70			30	1.0
612	70	10	20		1.0
613	80			20	1.0
614		31	68		1.0
615	89			10	0.999919
617	10	15		5	1.0
620		10	85		1.0
621			10	89	1.0
623		10		89	1.0
624	85		10		1.0
625	89			10	1.0
626	89		10		1.0
629	89	10			1.0
630			91	8	1.0
631	91			8	1.0
632			8	91	1.0
635	91			8	1.0
639		9	90		1.0
641		9		90	1.0
642			90	9	1.0
643		9	90		1.0
644	9	90			1.0
650	5		94		0.998397
661	95		4		0.997218
662	95			4	0.997218
664	4		95		0.997218
666	95	4			0.997218
669	95		4		0.997218
670			4	95	0.997218
671	95	4			0.997218
673		95	4		0.99692

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain