SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22583

Length: 1383 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22583

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-expansin 11, putative n=1 Tax=Ricinus communis RepID=B9R8E5_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	alpha-expansin 11	-	-	82%

Source	InterPros	Term	Type	Identity
Blast2go	Expansin	IPR002963	-	82%
Blast2go	Expansin/pollen allergen, DPBB domain	IPR007112	-	82%
Blast2go	Pollen allergen/expansin, C-terminal	IPR007117	-	82%
Blast2go	Expansin/Lol pI	IPR007118	-	82%
Blast2go	Barwin-related endoglucanase	IPR009009	-	82%
Blast2go	Barwin-like endoglucanase	IPR014733	-	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMF3

Fln msg:

Fln protein: MVMGIIKRQAASLVKGFVIALVFSISVAEGSAYTSSGWTSGHATFYGGSDASGTMGGACGYGDLYSAGYGTKTAALSTALFNSGATCGACFQIQCDISKDPQWCLPGPQSITITATNFCPPNYALPSNDGGWCNPPLMHFDMAQPAWEKIAIYSGGIVPVQFRRVPCTPVGGVRFTINGRSYFELVLLSNVGGAGDISAVSIKGSNTGWQPMSRNWGANWQSNSYLSGQSLSFQVTTSDGNSITFYNVAPSNWQFGQTFATSQQFN*

Protein Length: 268

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGACACGGCTTTGCATCCAAGCACTAGCGCCTGCAACTTTTCTGGGTTGAGAAAGCCGAGTAAACCCATTTGATACA_-_ATGGTCATGGGGATCATAAAGCGCCAGGCAGCTAGTCTTGTGAAGGGATTTGTTATTGCATTGGTTTTTAGTATATCAGTTGCAGAGGGCAGTGCGTATACTAGTTCTGGATGGACCAGCGGCCATGCTACATTCTATGGAGGCAGCGATGCCTCTGGCACCATGGGGGGCGCTTGTGGATATGGTGATCTATACAGCGCTGGCTATGGCACTAAAACTGCAGCTCTGAGCACCGCTCTGTTTAACAGTGGGGCCACTTGTGGGGCATGCTTCCAGATACAGTGTGATATAAGCAAGGATCCACAGTGGTGTTTGCCAGGGCCACAATCGATAACAATCACAGCGACAAATTTCTGCCCTCCTAATTACGCTCTTCCCAGCAATGATGGGGGTTGGTGTAATCCTCCCCTCATGCATTTCGACATGGCCCAACCTGCGTGGGAGAAGATCGCCATTTACAGCGGAGGGATTGTGCCCGTTCAATTCAGAAGAGTGCCGTGCACACCTGTTGGAGGTGTTCGATTCACCATTAATGGCCGTTCGTACTTCGAGCTTGTCCTGCTCTCGAATGTGGGCGGAGCAGGGGATATTAGCGCGGTGTCGATTAAGGGTTCGAACACTGGATGGCAACCCATGTCCAGGAACTGGGGAGCCAACTGGCAGAGCAACTCGTACCTCAGTGGGCAGAGCCTGTCCTTCCAAGTGACCACCAGTGATGGCAATTCCATTACCTTCTACAACGTTGCCCCTTCGAATTGGCAATTCGGACAGACTTTTGCAACCTCGCAGCAGTTCAATTGA___TTTCGCAATCCTATGTTTTATTTCACTATATTTCGTATTTGTTTTATGACCAGTACCAGAATTCTATATAAGTTATCCTAAATCAGTACCAAAACTTCTGAAAATAACTCTGAATACAGTCCGGGTGCTTGAATGGCGGCAGCAGAGGCGAGCTTGATCATGAATCTTCGTTGCAGCAGCCCGCTGTTCTACCTATAACAGTTGTCACCGCCTCAGCCAAAAGTCGGTGGCTGAACTATCAAACCGTGCAGACTGTAGCTTTGTATAATCTGGTTATGGACCTTGTCATCCTTCTGTAAAGAGTGCGATATATTCTATAGATAGATAAATATCCATGTTGCTGATATTCTTCTTCTCGGCTCTGTGAGCCGAACCGTGTCCCAATGCTCTGTAGATTCGTAAAGGGTACTGTCCATTTTTAAAGCTTGGATAATAAATGCATGGTTCAGTTGAAAATAGAGTGATGAATTTCGAGAATAG

Fln Alignment:

sp_v1.1_unigene22583___IALVFSISVAEGSAYT-SSGWTSGHATFYGGSDASGTMGGACGYGDLYSAGYGTKTAALSTALFNSGATCGACFQIQCDISKDPQWCLPGPQSITITATNFCPPNYALPSNDGGWCNPPLMHFDMAQPAWEKIAIYSGGIVPVQFRRVPCTPVGGVRFTINGRSYFELVLLSNVGGAGDISAVSIKGSNTGWQPMSRNWGANWQSNSYLSGQSLSFQVTTSDGNSITFYNVAPSNWQFGQTF
B8LMF3_______________LASVFCFWWIAGAAYALDSSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLTCGACYEMKCNEETDPQWCLPG--TVTVTATNFCPPNNALPNDNGGWCNPPLQHFDMAQPAYQQIAIYRGGIVPIMFRRVPCVRKGGVRFTINGHSYFNLVLITNVGGAGDVEAVSIKGSNSGWQAMSRNWGQNWQSNSYLNGQTLSFQVTTSDGRTVTSYNVAPANWQFGQTF

SNPs (tot: 113)

Position	A %	C %	G %	T %	Probability
177		14		85	0.999981
178	85		14		0.999981
186	14	85			0.999981
187	85	14			0.999981
188		14	85		0.999981
189	85			14	0.999981
190			85	14	0.999981
194	85			14	0.999981
197	14		85		0.999981
199		14	85		0.999981
200	14			85	0.999981
362		14		85	0.993533
365		14	85		0.993533
367			85	14	0.993533
372		14	85		0.993533
376		85	14		0.993533
378	85			14	0.993533
387		14	85		0.993533
389		14	85		0.993533
464		80		20	0.995493
466			20	80	0.995493
467	80	20			0.995493
469			20	80	0.995493
471	80		20		0.995493
478	33			66	1.0
481		66		33	1.0
482	66		33		1.0
485	66			33	1.0
486	66		33		1.0
488		33	66		1.0
490		33		66	1.0
491			66	33	1.0
492		33	66		1.0
493	33		66		1.0
495		14	85		0.993533
496			14	85	0.993533
498		28	57		1.0
502	14			85	0.993533
503	71	14	14		0.984337
504	85	14			0.993533
505		14		85	0.993533
506		85	14		0.993533
507		85		14	0.993533
509		57	14	14	0.979185
511	14	71		14	0.984337
512		85	14		0.993533
517		14	85		0.993533
518	14	85			0.993533
531		83		16	0.994512
658		16		83	0.994512
662		83	16		0.994512
665	16	83			0.994512
666		16		83	0.994512
669		83		16	0.994512
671	83		16		0.994512
672	83	16			0.994512
676	14	14	71		0.984337
677		14	85		0.993533
678			71	28	1.0
680			85	14	0.993533
685	85	14			0.993533
686			85	14	0.993533
687			85	14	0.993533
690	85	14			0.993533
692	85		14		0.993533
694		14		85	0.993533
698			85	14	0.993533
701	14		85		0.993533
803		87	12		0.992554
804	87			12	0.992554
805	87	12			0.992554
812	75			25	1.0
813		87	12		0.992554
815	87			12	0.992554
818		12	87		0.992554
822	12		75		0.975346
826			12	87	0.992554
827			12	87	0.992554
847		14		85	0.993533
849		85	14		0.993533
850	14	85			0.993533
859		14		85	0.993533
862			85	14	0.993533
866		14		85	0.993533
869	14		85		0.993533
871	85		14		0.993533
905	83	10		5	1.0
906		13		84	1.0
907		2	10	86	1.0
908	7			92	1.0
909		89	10		1.0
910	10		81	7	1.0
912	84	5	2	7	0.999993
913	84	2	5	7	0.999993
915	2	89	5		0.971054
918	87	5	5	2	0.9224
919	1	20	2	72	1.0
920		9	89		1.0
921	1	3		95	0.999639
922		2	17	80	1.0
923		2	7	90	1.0
924	2	3	21	71	1.0
925	92	7			1.0
926	1	17		79	1.0
927	1	2	6	90	1.0
929	1	82	15		1.0
930	84	1	14		1.0
933	53		46		1.0
935	93	6			1.0
936	6			93	1.0
937	2	6		91	1.0
940	1		93		1.0
941	3			94	0.996114

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain