SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22571

Length: 2715 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22571
CGTCGTGACCTTGGCTGTCACTCAAACTAAAAGGCCATTCCTCTCTGTAGGATCCATTTATGTTGCAAAGGGTCACTGTTAGTAAATTGAAAGGTTTTCTGTGTTTGTGGGATTCTTTAATCTCCTGCAGTTGCATGTCAAGGGTTCGAAACTTGCGTGGCTTTAAATAGTGCCGCGGGGATCTGGATCTGGGCCATTTTGTGGAAGCTGGTGCCAAATTCTATCTTGGACAGCCTATTTTTTCAAAGATTGGCTCAGTTCTACTTTGTTATTTGAGAGGAAATTGTCTGTGGCCTGGAGATCCTGAAATTTTGGTGGATTGAGTTCAGTCTTTGACCTTTCAGAATGGAAATCAACGGCGTGCACGAGTATGAAAATGGGAGCTCCTTCACAGATGGGAGCTTCGAGGCGTTGATCGATGAGAACGGTCATGCTAAAAGCACAAATCATGGCTGGACGACGGTGGTTTATCCAAAGCGGCAAAGAAAGCAGGTTAAAGAGGCGAATTCTGCTGACTTTGACAAAGTGAAATCGAACGGAGACGGTAAATCGATTTTCCAGTCCTTGGAGTTGCATGGGGAAGAAAGGCGAAGGCGAGCCGAGGAGCAGAGGGCTGCTGCGGCTAGTGCTCTGTCTGCCGGTGAAAGTAACGGTAAAATTGCCGCCTCTGATGAAGATAGTGAGGAGGAGGCTGCGAATCAGAGCGGCGCTGCGAATGGCGAAGAGAAGAAGGTGAAGCAAAAGAAGCCTAAGAAGCCGAAGGTTACTGTAGCCGAAGCCGCTGCGAAAATCGATCCTTCGAATCTGGCTGATTTCCTTGCAGAAATTACGGCCTCGTATGAAAAGCAGGCTTATGTTCAGTTGATGCGATTTGCGGATTACTTTGCACGAGCATTTAGTTCGGTCAACTCTGCCCAGTTCCCTCTGAACAAGATACTGAAGGAGTCTACTGTGGCCAAGCTTGCAGAAATACCTCTGTGTTACATTCCAGAAGCTGTTAGTAAGACATCGGCAGATTGGATTAATCAGCAGCCTACAGAAGAGCTGAACAAATTCAGTTTGTGGGCCTTCCGTAGTGTGCTTGAAGATATAGGCACTCAAGGGGGGCATAAAGGATCAAAGCAAGCAGCACAACCAGTTGCAGTGAAGACAAAGGTAGCATTATTTGTAGTCTTAGCAATGGTGTTGAGGAGGAGACCTGACATCTTGCTACAACTTTCACCAACGATTAAGGGTGAAGCACAAATTCAGGTTCAGGATAGATTGCCTATGATTGTATGGTCTATTGCACAGGTTTGCCAGGTTGACCTGGTAATTGGAATGTCTACATGGGTGCAAATTCTTCTACCGTTGGCAGTTGGTAAAACAAGTACACCCCTTTCTCGAGACCTGACTTTGCAGTTGATAGAAAGCTGCATATTAGAAAATACCAAGGCTCGACCAATTCTATTAAATGGTGCTATCAGAAAAGGAGAACGGATAGTTCCACCATCTGCACTTAATCTCTTAATGCAGGCTGCTTTTCCACTTGATTCAGCTCGGACAAAGGGGACTGAAAGGTTTGTAGCAATATATCCGTTCTTGAAGGAGTTAGCCCTGACCGGTTCTCATAGAAGTAAAGCAACAAGACCAGTAGCACAGCAACTTCTGCCTTTAATGGCTACAGCAATAAGTGAGGAAAACCCAGGTTTAACAAATGAAGCTTCTGGCGTTTTTATTTGGTGTCTAACCCAGAACTCAGATTGCTACAAACAATGGGAAAAACTGCATATTGAGCATATAAAGGCAAGCACGATTATATTAGAGAAGCTGAGCGCTGAATGGAAAAACAATGTGTCAAAACTTAGTCCCTTGGAGGATTTAAAACGAACCTTGAAGTCTCTAAGATCAAAGAATCAACATGCCGTGGAAGGTGAAGATGGGGATGCCCGTTTTCAAGCTTCTGTGAAGGCCTCTGACAAATATTGTAAGATATTGTTGGGGAGGCTCTCACGCACAGCTGCTTGTCTTAAAGCAACTACAATCACAGCTTTGCTGATACTGTTGATTGCATTCTTTGTCACGCTTGCACTGCCAAGTCTGGAGTCCGGGGAATTGAAGAAGAGAGCTTTGGAATTCAGTCGAAGCTTTTCAAGTTGATCGCGTGTTTCAAGTTCCATTGGATTTTTGCCGTATCAATTCTTTGGGGATATGCTTTCCTGAATGTCTCTCCTTGAATAAGAGGGGTTGTAAATTTGCATTCCAAAGAAATCTTACTAATTGATAGGAATTCCTTTTTATTTATTTAGTGAGTGAATTAGAATATTGGCCTGTATTCCCCAAGAGATGAATGGGGAGAACCCTCCTCTATACTACAATATCTCAACAATGTTTAACAAAGTCTCCCACATAAGTGGTGGCTGCTTTTCTCGGATCCGGTCCTTCCAATTTATATTGCCCTAGAAATTTTGTATGCAAACTCTATTTGTAGGTGAAAGATAAATAATTATCTGAGGTCCTCTGTTTTGACTATCTCACCCCATGATTAAATTTATGAGCTGTCAATGCTACCCTTGGGATTTATTCAGTTGATGCAAAATAAATTGCTGATACGATCACTCTAGACAAATTTGTATGGATCTCTGTATTGCATTAGTACATCGTGTGTCGGGTTTTATGGCCACAAGAATATGTTGTTTCATGTACTGAAATACTGATATGGTGTCGTACTATAAT

Ace file of the UniGene sp_v1.1_unigene22571

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF2359 domain containing protein	-	-	8.0e-11	22%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	47%
Blast2go	protein	-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	67%
Blast2go	nucleus	GO:0005634	Cellular Component	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HFG2

Fln msg:

Fln protein: MEINGVHEYENGSSFTDGSFEALIDENGHAKSTNHGWTTVVYPKRQRKQVKEANSADFDKVKSNGDGKSIFQSLELHGEERRRRAEEQRAAAASALSAGESNGKIAASDEDSEEEAANQSGAANGEEKKVKQKKPKKPKVTVAEAAAKIDPSNLADFLAEITASYEKQAYVQLMRFADYFARAFSSVNSAQFPLNKILKESTVAKLAEIPLCYIPEAVSKTSADWINQQPTEELNKFSLWAFRSVLEDIGTQGGHKGSKQAAQPVAVKTKVALFVVLAMVLRRRPDILLQLSPTIKGEAQIQVQDRLPMIVWSIAQVCQVDLVIGMSTWVQILLPLAVGKTSTPLSRDLTLQLIESCILENTKARPILLNGAIRKGERIVPPSALNLLMQAAFPLDSARTKGTERFVAIYPFLKELALTGSHRSKATRPVAQQLLPLMATAISEENPGLTNEASGVFIWCLTQNSDCYKQWEKLHIEHIKASTIILEKLSAEWKNNVSKLSPLEDLKRTLKSLRSKNQHAVEGEDGDARFQASVKASDKYCKILLGRLSRTAACLKATTITALLILLIAFFVTLALPSLESGELKKRALEFSRSFSS*

Protein Length: 599

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTAAAAGGCCATTCCTCTCTGTAGGATCCATTTATGTTGCAAAGGGTCACTGTTAGTAAATTGAAAGGTTTTCTGTGTTTGTGGGATTCTTTAATCTCCTGCAGTTGCATGTCAAGGGTTCGAAACTTGCGTGGCTTTAAATAGTGCCGCGGGGATCTGGATCTGGGCCATTTTGTGGAAGCTGGTGCCAAATTCTATCTTGGACAGCCTATTTTTTCAAAGATTGGCTCAGTTCTACTTTGTTATTTGAGAGGAAATTGTCTGTGGCCTGGAGATCCTGAAATTTTGGTGGATTGAGTTCAGTCTTTGACCTTTCAGA_-_ATGGAAATCAACGGCGTGCACGAGTATGAAAATGGGAGCTCCTTCACAGATGGGAGCTTCGAGGCGTTGATCGATGAGAACGGTCATGCTAAAAGCACAAATCATGGCTGGACGACGGTGGTTTATCCAAAGCGGCAAAGAAAGCAGGTTAAAGAGGCGAATTCTGCTGACTTTGACAAAGTGAAATCGAACGGAGACGGTAAATCGATTTTCCAGTCCTTGGAGTTGCATGGGGAAGAAAGGCGAAGGCGAGCCGAGGAGCAGAGGGCTGCTGCGGCTAGTGCTCTGTCTGCCGGTGAAAGTAACGGTAAAATTGCCGCCTCTGATGAAGATAGTGAGGAGGAGGCTGCGAATCAGAGCGGCGCTGCGAATGGCGAAGAGAAGAAGGTGAAGCAAAAGAAGCCTAAGAAGCCGAAGGTTACTGTAGCCGAAGCCGCTGCGAAAATCGATCCTTCGAATCTGGCTGATTTCCTTGCAGAAATTACGGCCTCGTATGAAAAGCAGGCTTATGTTCAGTTGATGCGATTTGCGGATTACTTTGCACGAGCATTTAGTTCGGTCAACTCTGCCCAGTTCCCTCTGAACAAGATACTGAAGGAGTCTACTGTGGCCAAGCTTGCAGAAATACCTCTGTGTTACATTCCAGAAGCTGTTAGTAAGACATCGGCAGATTGGATTAATCAGCAGCCTACAGAAGAGCTGAACAAATTCAGTTTGTGGGCCTTCCGTAGTGTGCTTGAAGATATAGGCACTCAAGGGGGGCATAAAGGATCAAAGCAAGCAGCACAACCAGTTGCAGTGAAGACAAAGGTAGCATTATTTGTAGTCTTAGCAATGGTGTTGAGGAGGAGACCTGACATCTTGCTACAACTTTCACCAACGATTAAGGGTGAAGCACAAATTCAGGTTCAGGATAGATTGCCTATGATTGTATGGTCTATTGCACAGGTTTGCCAGGTTGACCTGGTAATTGGAATGTCTACATGGGTGCAAATTCTTCTACCGTTGGCAGTTGGTAAAACAAGTACACCCCTTTCTCGAGACCTGACTTTGCAGTTGATAGAAAGCTGCATATTAGAAAATACCAAGGCTCGACCAATTCTATTAAATGGTGCTATCAGAAAAGGAGAACGGATAGTTCCACCATCTGCACTTAATCTCTTAATGCAGGCTGCTTTTCCACTTGATTCAGCTCGGACAAAGGGGACTGAAAGGTTTGTAGCAATATATCCGTTCTTGAAGGAGTTAGCCCTGACCGGTTCTCATAGAAGTAAAGCAACAAGACCAGTAGCACAGCAACTTCTGCCTTTAATGGCTACAGCAATAAGTGAGGAAAACCCAGGTTTAACAAATGAAGCTTCTGGCGTTTTTATTTGGTGTCTAACCCAGAACTCAGATTGCTACAAACAATGGGAAAAACTGCATATTGAGCATATAAAGGCAAGCACGATTATATTAGAGAAGCTGAGCGCTGAATGGAAAAACAATGTGTCAAAACTTAGTCCCTTGGAGGATTTAAAACGAACCTTGAAGTCTCTAAGATCAAAGAATCAACATGCCGTGGAAGGTGAAGATGGGGATGCCCGTTTTCAAGCTTCTGTGAAGGCCTCTGACAAATATTGTAAGATATTGTTGGGGAGGCTCTCACGCACAGCTGCTTGTCTTAAAGCAACTACAATCACAGCTTTGCTGATACTGTTGATTGCATTCTTTGTCACGCTTGCACTGCCAAGTCTGGAGTCCGGGGAATTGAAGAAGAGAGCTTTGGAATTCAGTCGAAGCTTTTCAAGTTGA___TCGCGTGTTTCAAGTTCCATTGGATTTTTGCCGTATCAATTCTTTGGGGATATGCTTTCCTGAATGTCTCTCCTTGAATAAGAGGGGTTGTAAATTTGCATTCCAAAGAAATCTTACTAATTGATAGGAATTCCTTTTTATTTATTTAGTGAGTGAATTAGAATATTGGCCTGTATTCCCCAAGAGATGAATGGGGAGAACCCTCCTCTATACTACAATATCTCAACAATGTTTAACAAAGTCTCCCACATAAGTGGTGGCTGCTTTTCTCGGATCCGGTCCTTCCAATTTATATTGCCCTAGAAATTTTGTATGCAAACTCTATTTGTAGGTGAAAGATAAATAATTATCTGAGGTCCTCTGTTTTGACTATCTCACCCCATGATTAAATTTATGAGCTGTCAATGCTACCCTTGGGATTTATTCAGTTGATGCAAAATAAATTGCTGATACGATCACTCTAGACAAATTTGTATGGATCTCTGTATTGCATTAGTACATCGTGTGTCGGGTTTTATGGCCACAAGAATATGTTGTTTCATGTACTGAAATACTGATATGGTGTCGTACTATAAT

Fln Alignment:

sp_v1.1_unigene22571___SFEALIDENGHAKS--TNHGWTTVVYPKRQRKQVKEANSADF----DKVKSNG-----DGKSIFQSLELHGXXXXXXXXXXXXXXXXXXXXXXXNGKIXXXXXXXXXXXXNQSGAANGXXXXXXXXXXXXXXXXXXXXXXX--IDPSNLADFLAEITASYEKQAYVQLMRFADYFARAFSSVNSAQFPLNKILKESTVAKLAEIPLCYIPEAVSKTSADWINQQPTEELNKFSLWAFRSVLEDIGTQGG-HKGSKQAAQPVAVKTKVALFVVLAMVLRRRPDILLQLSPTIKGEAQIQVQDRLPMIVWSIAQVCQVDLVIGMSTWVQILLPLAVGKTS-TPLSRDLTLQLIESCILENTKARPILLNGAIRKGERIVPPSALNLLMQAAFPLDSARTKGTERFVAIYPFLKELALTGSHRSKATRPVAQQLLPLMATAISEENPGLTNEASGVFIWCLTQNSDCYKQWEKLHIEHIKASTIILEKLSAEWKNNVSKLSPLEDLKRTLKSLRSKNQHAVEGEDGDARFQASVKASDKYCKILLGRLSR
F6HFG2_______________TLEPLVNGEGDVTNAHSNHGWQKVTYAKRNRKQ--QSNNSDSVGNSEKVRVNGTLATGDKPNVFRSLEQQAEERRRRVLEAQMVAAAAADDHQVRSKSKHRSDDEDDDSDDEVAAENGQVQEKKVKKPKVKKPKVTVADAASKIDAADLAAFLVDVSASYESKEDILLMRFADYFGRAFSAVNSSQFPWMKMFRESTVAKIADVPLCHISDVVYKTSVDWINQRSSEALGSFVLWSLDCILSDLASQQAVTKGSKKGLQHASSKSQAAIFVVLAMVLRRKPDVLINLLPTLRENSKYQGQDKLSVIVWMVAQACQGDLAVGLYLWAHNILPIVNGKSSCNPQSRDLVLQLVER-ILSAPKARTILVNGAIRKGERLVPPSAFEILMRATFPASSARIKATERFEAVYPTLKEVALAGPAGSKAMKQASQQILTFTIKAAGESIPELSNETSSIFIWCLTQNPDCYKQWDRIYLDNLEASVAILRKLTEQLKELSLKQSSLDPLRETLKSFRHKNEKELAGGE-DAAHQALLKDADKYCKGILGRVSR

SNPs (tot: 76)

Position	A %	C %	G %	T %	Probability
34		25	75		0.996473
36		88		11	0.923564
38	88		11		0.923564
41	11			88	0.923564
46		88	11		0.923564
47			11	88	0.923564
54		11	88		0.923564
55	11		88		0.923564
56	88	11			0.923564
59	11	88			0.923564
110		10		90	0.90298
114			90	10	0.90298
118		10		90	0.90298
122			10	90	0.90298
123	90		10		0.90298
124	90	10			0.90298
126		90	10		0.90298
128	90	10			0.90298
134		10	90		0.90298
706	80		20		0.995493
1165	80		20		0.995493
1167		20		80	0.995493
1168	80		20		0.995493
1170	20			80	0.995493
1171		20		80	0.995493
1172		20	80		0.995493
1174	80			20	0.995493
1176			20	80	0.995493
1180	80	20			0.995493
1181	20		80		0.995493
1183	80			20	0.995493
1184	80	20			0.995493
1185	20			80	0.995493
1222		80		20	0.995493
1279			25	75	0.996473
1281			25	75	0.996473
1308		25		75	0.996473
1390	66			33	0.997452
1397	66		33		0.997452
1400			33	66	0.997452
1406		33		66	0.997452
1408		33	66		0.997452
1459			25	75	0.996473
1530		87	12		0.992554
1531	87			12	0.992554
1533			12	87	0.992554
1537		12		87	0.992554
1539		87		12	0.992554
1540	87		12		0.992554
1545	12		87		0.992554
1546		12	87		0.992554
1547	87			12	0.992554
1571			88	11	0.923564
1572		88	11		0.923564
1573	88		11		0.923564
1574	88		11		0.923564
1642	66		33		1.0
1819		72		27	1.0
1827			80	20	0.999996
2113			19	80	1.0
2115		19		80	1.0
2119	80	19			1.0
2123	80			19	1.0
2129	80	19			1.0
2130			80	19	1.0
2132	9			90	0.999872
2206	91		8		1.0
2207	91	8			1.0
2212	8			91	1.0
2421			95	4	0.996252
2425		88		9	1.0
2501		86		13	1.0
2552		36		64	1.0
2586	85			15	1.0
2603	18			81	1.0
2605		12		87	0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain