SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22559

Length: 3437 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22559
CGTCGTGACCTTGGCTGTCACTCACTCAGTTCTGATTCATATCAAGATTCAATTGCTCAATCATCACCATAACAATCACCTTTCATCTTCTTCATTTTCATGTTCTGCAGCTACATACCCAATTGCCCACTGTAGATTCGTTGATAACTTTTACTCATAATGATGGTGTTGGTGAATAACAGGTTATAGATATACTGATGTCTAGTATTGCTGGCTATCGCATTCTCTGTTAATTGCATTTCACTACATTGGGTAATTGTACCCGGTGTACATTGGGTTTCCAATCTGAAATTAATATATTGCTGGTGCTGAAATAGTTGAAGGTTTTCTGAGCTATGGGTGGCAGCAACAGGAGAGGGCTCTGTTTGCCGGTAGATGTAGCAAAACTCTCTATCCTTGGCGATTATTGACCAGAAGACCCAGGTTCGGTCTTTTGGTCGAGGATCCATACCCTTGTGTAGGAGGTTTCAAGTTTTATGATTGCAGCATGTTTTTCCTCCTGGGATCTAGTCAATAAGAGTCTACATTTGCCATCATTGTTTTCCTGGTTAGGCATCCTTGTTTTACTGGAATTTTGTAGCAGAGAGGATGGCGCCCAGCTTTGATTTTTCTGAGTGGTGGTCTAGGGACACCCACAAGGGCACCCCTGTTGTGGTAACAATGGAGAATCCCAATTGGTCAATGCTGGAACTGGAAAACCCAGCTGCTGCAATGCAGCAGGTGGACAAGGACAGGGGCAAGAATGCCAGGCAGCTGACATGGGTGTTGCTTCTTAAGGCTCACCGCGCTGCTGGGTGCCTTGCCTGGCTTGCTACAGGACTGTGGACTCTTCTCAGTATGGTGAAGAAGAGGTTAATTTTCAGGCAAGGGGTGGCAATGGAGTCGGAAATATCGAAAAAGGAGAAATTGTTTAGGTTTCTCAAGGCATTTTTGATATTTGCACTGGCAGCACTAGTATTTGAAGTATTTGCCTACTGGAAAGGTTGGCATTTTTCCACAACTTATTTGTACGTGCCAACTTCATTTGGGATTCAAGATTTTTTGCAATGGATATATATCTCTTGGGTTTCATTCAGATCCAATTACATTGCTCCGCCAATTCAAACTCTGGCAAACATTTGCATCATTCTCTTTTTGATTCAGTCTGTGGACCGGATCGTCCTCTGCATCGGTTGTTTTTGGATCAAGTATAAGAAGATCAAGCCGAAGCCAAAAGATGAATCCTTTGAATTAAAGGATGTTGAACAACAAGGGTCTGCTTATCCTATGGTGCTGGTACAAATTCCCATGTGCAATGAGAAGGAGGTGTACGCACAATCCATTTCTGCTGTTTGTCAGCTTGATTGGCCAAAGGATCGTCTGTTAATTCAAGTACTAGATGATTCATATGAAGATGATGTTCAAGAACTTATCAGAACAGAAGTTCTCAAGTGGAACCAGAAAGGCGTCAACATTCTTTACCGGCATCGGTTGATTAGGACTGGTTATAAAGCTGGCAATCTGAAGGCTGCAATGAGTTGTGATTATGTCAAAGACTATGAGTTTGTTGCAATTTTTGATGCAGACTTCCAGCCAAACCCTGATTTCCTGAAACAGACTGTTCCACATTTCAAGGATAATCCTGAACTCGGCTTGGTCCAGGCTCGGTGGTCTTTTGTAAATAGAGATGAAAATTTGTTAACACGACTGCAGAACATCAATCTTTCTTTCCACTTTGAGGTAGAGCAGCAGGTGAATGGAGTCTTTCTCAATTTCTTTGGATTCAACGGGACAGCTGGTGTCTGGCGAATAAAATCTCTTGAGGATTCTGGAGGTTGGCTTGAAAGAACAACTGTTGAAGATATGGACATTGCTGTGCGTGCCCATCTGAAGGGGTGGAAATTTATTTTTCTCAATGATGTCACGGTTCTTTGCGAGGTTCCAGAGAGTTATGAAGCCTACAGGAAGCAACAACACCGATGGCATTCAGGTCCTATGCATCTTTTTCGACTCTGCCTTCCAGATATAATTACTTCCAAGATATCTATTGGCAAGAAAGCGAACCTCATTTTGTTGTTCTTCCTTCTAAGAAAGTTGATCCTTCCATTTTATTCCTTTACATTGTTCTGCATTATTCTTCCAATGACCATGTTTGTACCAGAGGCAGAACTACCTATCTGGGTGATATGCTATATCCCTGCTGTGATGTCATTTTTGAATGTGTTGCCAGCACCGAGATCATTCCCTTTCATTATCCCTTATCTTCTTTTTGAAAATACTATGTCTGTTACCAAGTTCAATGCTATGGTATCTGGACTGTTTCAACTGGGCAGTGCTTACGAATGGATTGTTACAAAGAAGACAGGCAGAGCTTCTGAATCAGATTTGCTAGCTGTGGCCGAAAGAGAATCAAAGAGTCTAAGCCAACCACTTCATCGCGGGGCTTCTGAAACTGGCCTCGATGTGTTGAGCAAATTGAGCAAGCAGCCATCCACACCTCGAATCAAAAAGATTAATCGATTGTACAGAAAGGAATTGGCTTTGGCTTTTCTCCTACTTACTGCAGCAGCCAGAAGTTTACTATCAGCCCAAGGGATTCATTTCTATTTCCTACTATTTCAGGGTGTGTCATTTCTGCTTGTTGGTCTTGACCTGATCGGGGAGCAAGTTAGCTGAAATATGATCCTATTAAGCTTCTGTTGCGATGCCAATGCAACAAGAGAAGTTGTAATAATCTTTCTTGATTCACGCGTTAAGTGCAAAATTCCACACTCGGGGATGTCTCTGGTGTAGATTTGCATCCAGATTAAACAGATTTCTCTACAATTCCATGGCCTAAAAGTTTTATTTGCCATAAAGAAGTCTGGTATTGCAGGTTTCTCATGGCAATTGAATAGTGGGAGACCAATATGCCAGACAGCTAGGATGTTAAGGAGCTCTTCTTCACTAATTAATGCTAGAAGAATTAACACAGTTCTGGTGTTTTAGAAGGTGATATAGTCTCCAACTATGGAATTCCAGCAATTTGGTTTTGTCAGGTGCCATGGCAGCCGTAGCAAATTCATGCAAAATTCCTTCTTTGTCTAGAGCGTGACATTGTTGTTATTAACTGACACCTTTGGTAGTCCTCCTTTAGGTTCTTTTTCCATGTCATTATTTTCTTCAACATTATTATCATAAAGCCAGCGTTGCAAAATTATGTGCTGGTATCCTTTCTGGCAGGGTAGGCTTGGCATTAAGCCCGTCTGTCCTGAGAGTTTGAAGTATAGAATTACTACTATTGGCAGTTATGTGTTGTAAGCAATTATTTGTTCTCTTCAATAATCATCTTGAGATGAAATACAAATTTGTATTGTTCGTTCACACTTCAATTGAGTGGAATTTATTTAATGAAAGCATTTCTCTTGAAAGGGAAATCGTAGAATTTATTTGTATTGCTCATTCACTCTTCAATTGAG

Ace file of the UniGene sp_v1.1_unigene22559

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transferase, transferring glycosyl groups, putative	-	-	64%
FL-Next	tr=Cellulose synthase-like A1; Pinus taeda (Loblolly pine).	-	-	45%
Blast2go	transferring glycosyl	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	83%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 2	IPR001173	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A3QT94

Fln msg: your sequence is longer than subject: 689 - 530

Fln protein: MAPSFDFSEWWSRDTHKGTPVVVTMENPNWSMLELENPAAAMQQVDKDRGKNARQLTWVLLLKAHRAAGCLAWLATGLWTLLSMVKKRLIFRQGVAMESEISKKEKLFRFLKAFLIFALAALVFEVFAYWKGWHFSTTYLYVPTSFGIQDFLQWIYISWVSFRSNYIAPPIQTLANICIILFLIQSVDRIVLCIGCFWIKYKKIKPKPKDESFELKDVEQQGSAYPMVLVQIPMCNEKEVYAQSISAVCQLDWPKDRLLIQVLDDSYEDDVQELIRTEVLKWNQKGVNILYRHRLIRTGYKAGNLKAAMSCDYVKDYEFVAIFDADFQPNPDFLKQTVPHFKDNPELGLVQARWSFVNRDENLLTRLQNINLSFHFEVEQQVNGVFLNFFGFNGTAGVWRIKSLEDSGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVTVLCEVPESYEAYRKQQHRWHSGPMHLFRLCLPDIITSKISIGKKANLILLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPIWVICYIPAVMSFLNVLPAPRSFPFIIPYLLFENTMSVTKFNAMVSGLFQLGSAYEWIVTKKTGRASESDLLAVAERESKSLSQPLHRGASETGLDVLSKLSKQPSTPRIKKINRLYRKELALAFLLLTAAARSLLSAQGIHFYFLLFQGVSFLLVGLDLIGEQVS*

Protein Length: 690

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCAGTTCTGATTCATATCAAGATTCAATTGCTCAATCATCACCATAACAATCACCTTTCATCTTCTTCATTTTCATGTTCTGCAGCTACATACCCAATTGCCCACTGTAGATTCGTTGATAACTTTTACTCATAATGATGGTGTTGGTGAATAACAGGTTATAGATATACTGATGTCTAGTATTGCTGGCTATCGCATTCTCTGTTAATTGCATTTCACTACATTGGGTAATTGTACCCGGTGTACATTGGGTTTCCAATCTGAAATTAATATATTGCTGGTGCTGAAATAGTTGAAGGTTTTCTGAGCTATGGGTGGCAGCAACAGGAGAGGGCTCTGTTTGCCGGTAGATGTAGCAAAACTCTCTATCCTTGGCGATTATTGACCAGAAGACCCAGGTTCGGTCTTTTGGTCGAGGATCCATACCCTTGTGTAGGAGGTTTCAAGTTTTATGATTGCAGCATGTTTTTCCTCCTGGGATCTAGTCAATAAGAGTCTACATTTGCCATCATTGTTTTCCTGGTTAGGCATCCTTGTTTTACTGGAATTTTGTAGCAGAGAGG_-_ATGGCGCCCAGCTTTGATTTTTCTGAGTGGTGGTCTAGGGACACCCACAAGGGCACCCCTGTTGTGGTAACAATGGAGAATCCCAATTGGTCAATGCTGGAACTGGAAAACCCAGCTGCTGCAATGCAGCAGGTGGACAAGGACAGGGGCAAGAATGCCAGGCAGCTGACATGGGTGTTGCTTCTTAAGGCTCACCGCGCTGCTGGGTGCCTTGCCTGGCTTGCTACAGGACTGTGGACTCTTCTCAGTATGGTGAAGAAGAGGTTAATTTTCAGGCAAGGGGTGGCAATGGAGTCGGAAATATCGAAAAAGGAGAAATTGTTTAGGTTTCTCAAGGCATTTTTGATATTTGCACTGGCAGCACTAGTATTTGAAGTATTTGCCTACTGGAAAGGTTGGCATTTTTCCACAACTTATTTGTACGTGCCAACTTCATTTGGGATTCAAGATTTTTTGCAATGGATATATATCTCTTGGGTTTCATTCAGATCCAATTACATTGCTCCGCCAATTCAAACTCTGGCAAACATTTGCATCATTCTCTTTTTGATTCAGTCTGTGGACCGGATCGTCCTCTGCATCGGTTGTTTTTGGATCAAGTATAAGAAGATCAAGCCGAAGCCAAAAGATGAATCCTTTGAATTAAAGGATGTTGAACAACAAGGGTCTGCTTATCCTATGGTGCTGGTACAAATTCCCATGTGCAATGAGAAGGAGGTGTACGCACAATCCATTTCTGCTGTTTGTCAGCTTGATTGGCCAAAGGATCGTCTGTTAATTCAAGTACTAGATGATTCATATGAAGATGATGTTCAAGAACTTATCAGAACAGAAGTTCTCAAGTGGAACCAGAAAGGCGTCAACATTCTTTACCGGCATCGGTTGATTAGGACTGGTTATAAAGCTGGCAATCTGAAGGCTGCAATGAGTTGTGATTATGTCAAAGACTATGAGTTTGTTGCAATTTTTGATGCAGACTTCCAGCCAAACCCTGATTTCCTGAAACAGACTGTTCCACATTTCAAGGATAATCCTGAACTCGGCTTGGTCCAGGCTCGGTGGTCTTTTGTAAATAGAGATGAAAATTTGTTAACACGACTGCAGAACATCAATCTTTCTTTCCACTTTGAGGTAGAGCAGCAGGTGAATGGAGTCTTTCTCAATTTCTTTGGATTCAACGGGACAGCTGGTGTCTGGCGAATAAAATCTCTTGAGGATTCTGGAGGTTGGCTTGAAAGAACAACTGTTGAAGATATGGACATTGCTGTGCGTGCCCATCTGAAGGGGTGGAAATTTATTTTTCTCAATGATGTCACGGTTCTTTGCGAGGTTCCAGAGAGTTATGAAGCCTACAGGAAGCAACAACACCGATGGCATTCAGGTCCTATGCATCTTTTTCGACTCTGCCTTCCAGATATAATTACTTCCAAGATATCTATTGGCAAGAAAGCGAACCTCATTTTGTTGTTCTTCCTTCTAAGAAAGTTGATCCTTCCATTTTATTCCTTTACATTGTTCTGCATTATTCTTCCAATGACCATGTTTGTACCAGAGGCAGAACTACCTATCTGGGTGATATGCTATATCCCTGCTGTGATGTCATTTTTGAATGTGTTGCCAGCACCGAGATCATTCCCTTTCATTATCCCTTATCTTCTTTTTGAAAATACTATGTCTGTTACCAAGTTCAATGCTATGGTATCTGGACTGTTTCAACTGGGCAGTGCTTACGAATGGATTGTTACAAAGAAGACAGGCAGAGCTTCTGAATCAGATTTGCTAGCTGTGGCCGAAAGAGAATCAAAGAGTCTAAGCCAACCACTTCATCGCGGGGCTTCTGAAACTGGCCTCGATGTGTTGAGCAAATTGAGCAAGCAGCCATCCACACCTCGAATCAAAAAGATTAATCGATTGTACAGAAAGGAATTGGCTTTGGCTTTTCTCCTACTTACTGCAGCAGCCAGAAGTTTACTATCAGCCCAAGGGATTCATTTCTATTTCCTACTATTTCAGGGTGTGTCATTTCTGCTTGTTGGTCTTGACCTGATCGGGGAGCAAGTTAGCTGA___AATATGATCCTATTAAGCTTCTGTTGCGATGCCAATGCAACAAGAGAAGTTGTAATAATCTTTCTTGATTCACGCGTTAAGTGCAAAATTCCACACTCGGGGATGTCTCTGGTGTAGATTTGCATCCAGATTAAACAGATTTCTCTACAATTCCATGGCCTAAAAGTTTTATTTGCCATAAAGAAGTCTGGTATTGCAGGTTTCTCATGGCAATTGAATAGTGGGAGACCAATATGCCAGACAGCTAGGATGTTAAGGAGCTCTTCTTCACTAATTAATGCTAGAAGAATTAACACAGTTCTGGTGTTTTAGAAGGTGATATAGTCTCCAACTATGGAATTCCAGCAATTTGGTTTTGTCAGGTGCCATGGCAGCCGTAGCAAATTCATGCAAAATTCCTTCTTTGTCTAGAGCGTGACATTGTTGTTATTAACTGACACCTTTGGTAGTCCTCCTTTAGGTTCTTTTTCCATGTCATTATTTTCTTCAACATTATTATCATAAAGCCAGCGTTGCAAAATTATGTGCTGGTATCCTTTCTGGCAGGGTAGGCTTGGCATTAAGCCCGTCTGTCCTGAGAGTTTGAAGTATAGAATTACTACTATTGGCAGTTATGTGTTGTAAGCAATTATTTGTTCTCTTCAATAATCATCTTGAGATGAAATACAAATTTGTATTGTTCGTTCACACTTCAATTGAGTGGAATTTATTTAATGAAAGCATTTCTCTTGAAAGGGAAATCGTAGAATTTATTTGTATTGCTCATTCACTCTTCAATTGAG

Fln Alignment:

sp_v1.1_unigene22559___VPTSFGIQDFLQWIYISWVSFRSNYIAPPIQTLANICIILFLIQSVDRIVLCIGCFWXXXXXXXXXXXDESFELKD-VEQQGSAYPMVLVQIPMCNEKEVYAQSISAVCQLDWPKDRLLIQVLDDSYEDDVQELIRTEVLKWNQKGVNILYRHRLIRTGYKAGNLKAAMSCDYVKDYEFVAIFDADFQPNPDFLKQTVPHFKDNPELGLVQARWSFVNRDENLLTRLQNINLSFHFEVEQQXXXXXXXXXXXXXTAGVWRIKSLEDSGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVTVLCEVPESYEAYRKQQHRWHSGPMHLFRLCLPDIITSK-ISIGKKANXXXXXXXXXXXXXPFYSFTLFCIILPMTMFVPEAELPIWVICYIPAVMSFLNVLPAPRSFPFIIPYLLFENTMSVTKFNAMVSGLFQLGSAYEWIVTKKTGRASESDLLAVAERESKSLSQPLH
A3QT94_______________LPESFPSNDMTEQLALIWRQIRAPLIAPLLRFAVGICLIMSLMLFIERVYMAVVIVLVKLFGKRPEKRYKWEPIRDDIELGNSAYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPAIKELVTMECQRWASKGINIKYEIRDNRNGYKAGALKEGMKRSYVKDCDYVAIFDADFQPEPDYLWRTVPFLVHNPELALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRINALNEAGGWKDRTTVEDMDLAVRASLKGWKFVFVGDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEILRNKRVTPWKKFHVIYAFFFVRKIVAHIVTFTFYCVVIPATVLVPEVQVPKWGAVYIPSIITLLNAVSTPKSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWVVTEKLGDAMKHKSGKQIKKSRSRIGERLH

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
323	25		75		1.0
1434		83		16	0.994512
1624	66	33			0.997452
1628		66	33		0.997452
1632	66	33			0.997452
1635		66		33	0.997452
1641	33		66		0.997452
1642		33	66		0.997452
1645	33	66			0.997452
1878	16		83		0.994512
1961	80		20		0.995493
1962		80		20	0.995493
1968	20		80		0.995493
1970	80	20			0.995493
1974	80		20		0.995493
1976		20	80		0.995493
1979		80		20	0.995493
1981	20			80	0.995493
1982	80	20			0.995493
1984		20	80		0.995493
1985	20	80			0.995493
2102		16		83	0.994512
2161			13	86	0.999973
2162	86			13	0.999973
2164		86	13		0.999973
2167		13		86	0.999973
2172		13	86		0.999973
2175	86			13	0.999973
2176		13		86	0.999973
2179		7	92		0.999664
2180	7	76		15	1.0
2249			16	84	1.0
2267		9		90	0.999872
2330		72		27	1.0
2883	88		11		0.923564
3144		7		92	0.999664
3321		22		77	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain